Experiment: H2 deepwell acetate and vitamin FREE
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01845 and MMP_RS01850 are separated by 124 nucleotides MMP_RS01850 and MMP_RS01855 are separated by 42 nucleotides MMP_RS01855 and MMP_RS01860 are separated by 225 nucleotides MMP_RS01860 and MMP_RS01865 are separated by 90 nucleotides
MMP_RS01845: MMP_RS01845 - hypothetical protein, at 340,591 to 341,472
_RS01845
MMP_RS01850: MMP_RS01850 - phosphate ABC transporter substrate-binding protein, at 341,597 to 342,424
_RS01850
MMP_RS01855: MMP_RS01855 - 2-hydroxyacyl-CoA dehydratase family protein, at 342,467 to 343,588
_RS01855
MMP_RS01860: MMP_RS01860 - hypothetical protein, at 343,814 to 344,128
_RS01860
MMP_RS01865: MMP_RS01865 - GPR1/FUN34/YaaH family transporter, at 344,219 to 344,812
_RS01865
Position (kb) 342
343
344 Strain fitness (log2 ratio) -2
-1
0
1
2 at 341.472 kb on - strand at 341.472 kb on - strand at 341.475 kb on - strand at 341.475 kb on - strand at 341.476 kb on + strand at 341.476 kb on + strand at 341.476 kb on + strand at 341.476 kb on + strand at 341.501 kb on - strand at 341.501 kb on - strand at 341.603 kb on - strand at 341.658 kb on - strand at 341.780 kb on - strand, within MMP_RS01850 at 341.780 kb on - strand, within MMP_RS01850 at 341.781 kb on + strand, within MMP_RS01850 at 341.806 kb on + strand, within MMP_RS01850 at 341.806 kb on + strand, within MMP_RS01850 at 341.910 kb on + strand, within MMP_RS01850 at 341.942 kb on + strand, within MMP_RS01850 at 341.972 kb on - strand, within MMP_RS01850 at 342.047 kb on + strand, within MMP_RS01850 at 342.247 kb on - strand, within MMP_RS01850 at 342.265 kb on + strand, within MMP_RS01850 at 342.393 kb on + strand at 342.627 kb on - strand, within MMP_RS01855 at 342.628 kb on + strand, within MMP_RS01855 at 342.631 kb on + strand, within MMP_RS01855 at 342.632 kb on - strand, within MMP_RS01855 at 342.727 kb on + strand, within MMP_RS01855 at 342.823 kb on - strand, within MMP_RS01855 at 342.832 kb on - strand, within MMP_RS01855 at 342.833 kb on + strand, within MMP_RS01855 at 342.971 kb on - strand, within MMP_RS01855 at 342.972 kb on + strand, within MMP_RS01855 at 343.318 kb on + strand, within MMP_RS01855 at 343.403 kb on - strand, within MMP_RS01855 at 343.488 kb on + strand at 343.527 kb on + strand at 343.646 kb on - strand at 343.657 kb on - strand at 343.657 kb on - strand at 343.657 kb on - strand at 343.658 kb on + strand at 343.666 kb on - strand at 343.666 kb on - strand at 343.666 kb on - strand at 343.666 kb on - strand at 343.666 kb on - strand at 343.666 kb on - strand at 343.666 kb on - strand at 343.666 kb on - strand at 343.667 kb on + strand at 343.667 kb on + strand at 343.667 kb on + strand at 343.667 kb on + strand at 343.667 kb on + strand at 343.667 kb on + strand at 343.667 kb on + strand at 343.667 kb on + strand at 343.669 kb on + strand at 343.669 kb on + strand at 343.676 kb on - strand at 343.676 kb on - strand at 343.676 kb on - strand at 343.676 kb on - strand at 343.676 kb on - strand at 343.676 kb on - strand at 343.677 kb on + strand at 343.688 kb on + strand at 343.849 kb on + strand, within MMP_RS01860 at 343.849 kb on + strand, within MMP_RS01860 at 343.849 kb on + strand, within MMP_RS01860 at 343.849 kb on + strand, within MMP_RS01860 at 343.879 kb on - strand, within MMP_RS01860 at 343.879 kb on - strand, within MMP_RS01860 at 343.896 kb on + strand, within MMP_RS01860 at 343.911 kb on + strand, within MMP_RS01860 at 343.992 kb on + strand, within MMP_RS01860 at 344.004 kb on - strand, within MMP_RS01860 at 344.023 kb on - strand, within MMP_RS01860 at 344.096 kb on - strand, within MMP_RS01860 at 344.099 kb on + strand at 344.103 kb on + strand at 344.115 kb on + strand at 344.128 kb on - strand at 344.182 kb on - strand at 344.182 kb on - strand at 344.182 kb on - strand at 344.183 kb on + strand at 344.184 kb on - strand at 344.184 kb on - strand at 344.185 kb on + strand at 344.186 kb on - strand at 344.187 kb on + strand at 344.187 kb on + strand at 344.388 kb on + strand, within MMP_RS01865
Per-strain Table
Position Strand Gene LocusTag Fraction H2 deepwell acetate and vitamin FREE remove 341,472 - -1.3 341,472 - +0.8 341,475 - +0.4 341,475 - +0.4 341,476 + -0.6 341,476 + +1.0 341,476 + +2.2 341,476 + +0.2 341,501 - +0.3 341,501 - +1.0 341,603 - +0.4 341,658 - -0.3 341,780 - MMP_RS01850 0.22 +0.3 341,780 - MMP_RS01850 0.22 -0.1 341,781 + MMP_RS01850 0.22 -0.2 341,806 + MMP_RS01850 0.25 +0.6 341,806 + MMP_RS01850 0.25 -0.1 341,910 + MMP_RS01850 0.38 +1.0 341,942 + MMP_RS01850 0.42 +0.8 341,972 - MMP_RS01850 0.45 +0.1 342,047 + MMP_RS01850 0.54 -0.4 342,247 - MMP_RS01850 0.79 -1.4 342,265 + MMP_RS01850 0.81 +0.6 342,393 + +0.5 342,627 - MMP_RS01855 0.14 +0.2 342,628 + MMP_RS01855 0.14 +0.8 342,631 + MMP_RS01855 0.15 +1.1 342,632 - MMP_RS01855 0.15 +0.2 342,727 + MMP_RS01855 0.23 +0.9 342,823 - MMP_RS01855 0.32 -0.3 342,832 - MMP_RS01855 0.33 -0.7 342,833 + MMP_RS01855 0.33 +0.7 342,971 - MMP_RS01855 0.45 +1.0 342,972 + MMP_RS01855 0.45 +1.0 343,318 + MMP_RS01855 0.76 -0.2 343,403 - MMP_RS01855 0.83 +0.9 343,488 + +0.5 343,527 + +1.3 343,646 - -0.2 343,657 - +1.4 343,657 - -0.2 343,657 - -0.5 343,658 + +0.9 343,666 - +1.1 343,666 - +1.4 343,666 - +2.5 343,666 - -1.5 343,666 - -0.2 343,666 - -0.7 343,666 - +0.1 343,666 - +0.0 343,667 + +2.3 343,667 + +0.7 343,667 + -1.5 343,667 + +0.5 343,667 + +0.6 343,667 + -1.7 343,667 + -0.6 343,667 + +1.4 343,669 + -1.0 343,669 + +0.2 343,676 - -1.8 343,676 - -0.7 343,676 - +0.1 343,676 - +0.5 343,676 - +0.3 343,676 - +0.8 343,677 + +1.0 343,688 + -0.9 343,849 + MMP_RS01860 0.11 +1.5 343,849 + MMP_RS01860 0.11 -1.1 343,849 + MMP_RS01860 0.11 +0.4 343,849 + MMP_RS01860 0.11 +1.0 343,879 - MMP_RS01860 0.21 +1.1 343,879 - MMP_RS01860 0.21 +1.0 343,896 + MMP_RS01860 0.26 -0.9 343,911 + MMP_RS01860 0.31 -0.4 343,992 + MMP_RS01860 0.57 +0.9 344,004 - MMP_RS01860 0.60 +0.9 344,023 - MMP_RS01860 0.66 -0.5 344,096 - MMP_RS01860 0.90 -0.6 344,099 + +1.1 344,103 + +0.7 344,115 + +0.9 344,128 - +0.3 344,182 - -1.4 344,182 - +0.7 344,182 - -0.1 344,183 + -0.6 344,184 - +0.3 344,184 - -0.2 344,185 + -0.3 344,186 - -0.1 344,187 + +1.3 344,187 + -0.9 344,388 + MMP_RS01865 0.28 +0.2
Or see this region's nucleotide sequence