Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS22125

Experiment: Min media with glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS22120 and BPHYT_RS22125 are separated by 308 nucleotidesBPHYT_RS22125 and BPHYT_RS22130 are separated by 214 nucleotides BPHYT_RS22120: BPHYT_RS22120 - sulfate transporter, at 520,622 to 522,070 _RS22120 BPHYT_RS22125: BPHYT_RS22125 - hypothetical protein, at 522,379 to 522,969 _RS22125 BPHYT_RS22130: BPHYT_RS22130 - FAD-linked oxidase, at 523,184 to 524,572 _RS22130 Position (kb) 522 523Strain fitness (log2 ratio) -1 0 1at 521.835 kb on + strand, within BPHYT_RS22120at 521.958 kb on + strandat 522.657 kb on - strand, within BPHYT_RS22125at 522.657 kb on - strand, within BPHYT_RS22125at 522.659 kb on + strand, within BPHYT_RS22125at 523.267 kb on - strandat 523.662 kb on + strand, within BPHYT_RS22130at 523.663 kb on - strand, within BPHYT_RS22130at 523.753 kb on - strand, within BPHYT_RS22130at 523.878 kb on + strand, within BPHYT_RS22130at 523.878 kb on + strand, within BPHYT_RS22130at 523.933 kb on - strand, within BPHYT_RS22130

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Min media with glucose
remove
521,835 + BPHYT_RS22120 0.84 +0.3
521,958 + +0.5
522,657 - BPHYT_RS22125 0.47 -0.5
522,657 - BPHYT_RS22125 0.47 -1.3
522,659 + BPHYT_RS22125 0.47 -1.3
523,267 - -0.1
523,662 + BPHYT_RS22130 0.34 -0.8
523,663 - BPHYT_RS22130 0.34 +0.1
523,753 - BPHYT_RS22130 0.41 -0.1
523,878 + BPHYT_RS22130 0.50 -0.0
523,878 + BPHYT_RS22130 0.50 -0.9
523,933 - BPHYT_RS22130 0.54 +0.1

Or see this region's nucleotide sequence