Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS05245

Experiment: Min media with glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS05240 and BPHYT_RS05245 are separated by 151 nucleotidesBPHYT_RS05245 and BPHYT_RS05250 are separated by 575 nucleotides BPHYT_RS05240: BPHYT_RS05240 - heme biosynthesis protein HemY, at 1,209,609 to 1,210,799 _RS05240 BPHYT_RS05245: BPHYT_RS05245 - hypothetical protein, at 1,210,951 to 1,211,418 _RS05245 BPHYT_RS05250: BPHYT_RS05250 - phage abortive infection protein, at 1,211,994 to 1,212,647 _RS05250 Position (kb) 1210 1211 1212Strain fitness (log2 ratio) -3 -2 -1 0 1at 1210.860 kb on + strandat 1210.861 kb on - strandat 1211.087 kb on - strand, within BPHYT_RS05245at 1211.275 kb on + strand, within BPHYT_RS05245at 1211.275 kb on + strand, within BPHYT_RS05245at 1211.510 kb on + strandat 1211.510 kb on + strandat 1211.511 kb on - strandat 1211.665 kb on + strandat 1211.666 kb on - strandat 1211.666 kb on - strandat 1211.705 kb on + strandat 1212.120 kb on + strand, within BPHYT_RS05250at 1212.194 kb on + strand, within BPHYT_RS05250at 1212.312 kb on - strand, within BPHYT_RS05250at 1212.326 kb on + strand, within BPHYT_RS05250at 1212.370 kb on - strand, within BPHYT_RS05250at 1212.370 kb on - strand, within BPHYT_RS05250at 1212.370 kb on - strand, within BPHYT_RS05250at 1212.414 kb on + strand, within BPHYT_RS05250at 1212.415 kb on - strand, within BPHYT_RS05250at 1212.415 kb on - strand, within BPHYT_RS05250

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Min media with glucose
remove
1,210,860 + -0.9
1,210,861 - -0.8
1,211,087 - BPHYT_RS05245 0.29 +0.4
1,211,275 + BPHYT_RS05245 0.69 +1.1
1,211,275 + BPHYT_RS05245 0.69 -0.8
1,211,510 + -0.6
1,211,510 + -0.4
1,211,511 - -0.6
1,211,665 + +0.5
1,211,666 - -0.5
1,211,666 - +0.4
1,211,705 + +0.1
1,212,120 + BPHYT_RS05250 0.19 -1.2
1,212,194 + BPHYT_RS05250 0.31 +0.6
1,212,312 - BPHYT_RS05250 0.49 -0.1
1,212,326 + BPHYT_RS05250 0.51 -2.9
1,212,370 - BPHYT_RS05250 0.57 -0.1
1,212,370 - BPHYT_RS05250 0.57 +0.1
1,212,370 - BPHYT_RS05250 0.57 +0.2
1,212,414 + BPHYT_RS05250 0.64 -0.0
1,212,415 - BPHYT_RS05250 0.64 -0.1
1,212,415 - BPHYT_RS05250 0.64 -0.5

Or see this region's nucleotide sequence