Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_28520

Experiment: Vanillin 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_28515 and AO356_28520 are separated by 19 nucleotidesAO356_28520 and AO356_28525 are separated by 626 nucleotides AO356_28515: AO356_28515 - sugar ABC transporter permease, at 6,627,176 to 6,628,312 _28515 AO356_28520: AO356_28520 - multidrug MFS transporter, at 6,628,332 to 6,629,471 _28520 AO356_28525: AO356_28525 - fructose-bisphosphate aldolase, at 6,630,098 to 6,630,373 _28525 Position (kb) 6628 6629 6630Strain fitness (log2 ratio) -2 -1 0 1at 6627.512 kb on + strand, within AO356_28515at 6627.525 kb on - strand, within AO356_28515at 6627.653 kb on + strand, within AO356_28515at 6627.824 kb on + strand, within AO356_28515at 6627.896 kb on + strand, within AO356_28515at 6628.232 kb on + strandat 6628.233 kb on - strandat 6628.233 kb on - strandat 6628.292 kb on - strandat 6628.933 kb on - strand, within AO356_28520at 6628.934 kb on + strand, within AO356_28520at 6628.934 kb on + strand, within AO356_28520at 6628.990 kb on + strand, within AO356_28520at 6629.442 kb on - strandat 6629.442 kb on - strandat 6629.724 kb on + strandat 6629.803 kb on + strandat 6629.837 kb on - strandat 6629.893 kb on - strandat 6629.953 kb on + strandat 6630.001 kb on - strandat 6630.091 kb on + strandat 6630.091 kb on + strandat 6630.092 kb on - strandat 6630.421 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vanillin 2.5 mM
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6,627,512 + AO356_28515 0.30 +0.7
6,627,525 - AO356_28515 0.31 -0.3
6,627,653 + AO356_28515 0.42 +0.3
6,627,824 + AO356_28515 0.57 +0.4
6,627,896 + AO356_28515 0.63 -1.2
6,628,232 + +0.3
6,628,233 - +0.2
6,628,233 - +0.5
6,628,292 - -0.6
6,628,933 - AO356_28520 0.53 -2.2
6,628,934 + AO356_28520 0.53 +0.2
6,628,934 + AO356_28520 0.53 -0.3
6,628,990 + AO356_28520 0.58 -1.3
6,629,442 - +0.4
6,629,442 - -1.5
6,629,724 + -0.0
6,629,803 + -0.3
6,629,837 - -0.7
6,629,893 - +0.6
6,629,953 + +1.2
6,630,001 - +0.7
6,630,091 + +0.2
6,630,091 + -0.4
6,630,092 - -1.0
6,630,421 - +0.3

Or see this region's nucleotide sequence