Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_19595

Experiment: Vanillin 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_19585 and AO356_19590 are separated by 98 nucleotidesAO356_19590 and AO356_19595 are separated by 20 nucleotidesAO356_19595 and AO356_19600 are separated by 114 nucleotides AO356_19585: AO356_19585 - thiosulfate transporter subunit, at 4,391,585 to 4,392,583 _19585 AO356_19590: AO356_19590 - ion transporter, at 4,392,682 to 4,393,506 _19590 AO356_19595: AO356_19595 - urea transporter, at 4,393,527 to 4,394,426 _19595 AO356_19600: AO356_19600 - pyruvate kinase, at 4,394,541 to 4,395,956 _19600 Position (kb) 4393 4394 4395Strain fitness (log2 ratio) -2 -1 0 1at 4392.585 kb on + strandat 4392.586 kb on - strandat 4392.587 kb on + strandat 4392.587 kb on + strandat 4392.588 kb on - strandat 4392.588 kb on - strandat 4392.601 kb on + strandat 4392.638 kb on + strandat 4392.638 kb on + strandat 4392.638 kb on + strandat 4392.638 kb on + strandat 4392.638 kb on + strandat 4392.638 kb on + strandat 4392.638 kb on + strandat 4392.639 kb on - strandat 4392.639 kb on - strandat 4392.939 kb on + strand, within AO356_19590at 4392.947 kb on + strand, within AO356_19590at 4392.947 kb on + strand, within AO356_19590at 4392.947 kb on + strand, within AO356_19590at 4392.947 kb on + strand, within AO356_19590at 4392.947 kb on + strand, within AO356_19590at 4392.948 kb on - strand, within AO356_19590at 4392.948 kb on - strand, within AO356_19590at 4392.948 kb on - strand, within AO356_19590at 4392.948 kb on - strand, within AO356_19590at 4392.948 kb on - strand, within AO356_19590at 4392.951 kb on + strand, within AO356_19590at 4392.952 kb on - strand, within AO356_19590at 4392.952 kb on - strand, within AO356_19590at 4392.952 kb on - strand, within AO356_19590at 4392.998 kb on + strand, within AO356_19590at 4392.998 kb on + strand, within AO356_19590at 4392.998 kb on + strand, within AO356_19590at 4392.998 kb on + strand, within AO356_19590at 4392.999 kb on - strand, within AO356_19590at 4392.999 kb on - strand, within AO356_19590at 4392.999 kb on - strand, within AO356_19590at 4392.999 kb on - strand, within AO356_19590at 4392.999 kb on - strand, within AO356_19590at 4392.999 kb on - strand, within AO356_19590at 4392.999 kb on - strand, within AO356_19590at 4393.091 kb on + strand, within AO356_19590at 4393.091 kb on + strand, within AO356_19590at 4393.092 kb on - strand, within AO356_19590at 4393.092 kb on - strand, within AO356_19590at 4393.092 kb on - strand, within AO356_19590at 4393.092 kb on - strand, within AO356_19590at 4393.092 kb on - strand, within AO356_19590at 4393.092 kb on - strand, within AO356_19590at 4393.109 kb on + strand, within AO356_19590at 4393.110 kb on - strand, within AO356_19590at 4393.172 kb on + strand, within AO356_19590at 4393.172 kb on + strand, within AO356_19590at 4393.172 kb on + strand, within AO356_19590at 4393.172 kb on + strand, within AO356_19590at 4393.173 kb on - strand, within AO356_19590at 4393.187 kb on + strand, within AO356_19590at 4393.187 kb on + strand, within AO356_19590at 4393.187 kb on + strand, within AO356_19590at 4393.188 kb on - strand, within AO356_19590at 4393.188 kb on - strand, within AO356_19590at 4393.188 kb on - strand, within AO356_19590at 4393.191 kb on - strand, within AO356_19590at 4393.238 kb on + strand, within AO356_19590at 4393.253 kb on + strand, within AO356_19590at 4393.254 kb on - strand, within AO356_19590at 4393.254 kb on - strand, within AO356_19590at 4393.254 kb on - strand, within AO356_19590at 4393.292 kb on + strand, within AO356_19590at 4393.472 kb on + strandat 4393.472 kb on + strandat 4393.473 kb on - strandat 4393.473 kb on - strandat 4393.473 kb on - strandat 4393.473 kb on - strandat 4393.507 kb on - strandat 4393.507 kb on - strandat 4393.554 kb on + strandat 4393.555 kb on - strandat 4393.763 kb on + strand, within AO356_19595at 4394.053 kb on + strand, within AO356_19595at 4394.203 kb on + strand, within AO356_19595at 4394.203 kb on + strand, within AO356_19595at 4394.204 kb on - strand, within AO356_19595at 4394.204 kb on - strand, within AO356_19595at 4394.429 kb on + strandat 4394.429 kb on + strandat 4394.429 kb on + strandat 4394.429 kb on + strandat 4394.429 kb on + strandat 4394.429 kb on + strandat 4394.429 kb on + strandat 4394.429 kb on + strandat 4394.429 kb on + strandat 4394.429 kb on + strandat 4394.429 kb on + strandat 4394.429 kb on + strandat 4394.430 kb on - strandat 4394.430 kb on - strandat 4394.430 kb on - strandat 4394.430 kb on - strandat 4394.430 kb on - strandat 4394.430 kb on - strandat 4394.430 kb on - strandat 4394.430 kb on - strandat 4394.430 kb on - strandat 4394.430 kb on - strandat 4394.430 kb on - strandat 4394.430 kb on - strandat 4394.430 kb on - strandat 4394.533 kb on + strandat 4394.542 kb on + strandat 4394.543 kb on - strandat 4394.543 kb on - strandat 4394.618 kb on + strandat 4394.619 kb on - strandat 4394.619 kb on - strandat 4394.830 kb on + strand, within AO356_19600at 4394.830 kb on + strand, within AO356_19600at 4394.830 kb on + strand, within AO356_19600at 4394.831 kb on - strand, within AO356_19600at 4394.831 kb on - strand, within AO356_19600at 4394.944 kb on + strand, within AO356_19600at 4394.945 kb on - strand, within AO356_19600at 4394.945 kb on - strand, within AO356_19600

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Per-strain Table

Position Strand Gene LocusTag Fraction Vanillin 2.5 mM
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4,392,585 + -0.1
4,392,586 - -0.7
4,392,587 + +0.1
4,392,587 + +0.2
4,392,588 - +0.3
4,392,588 - -1.0
4,392,601 + +1.0
4,392,638 + +0.4
4,392,638 + -0.2
4,392,638 + +0.4
4,392,638 + +1.3
4,392,638 + +0.4
4,392,638 + -0.1
4,392,638 + -0.8
4,392,639 - +0.7
4,392,639 - +0.4
4,392,939 + AO356_19590 0.31 +0.5
4,392,947 + AO356_19590 0.32 +1.2
4,392,947 + AO356_19590 0.32 +0.1
4,392,947 + AO356_19590 0.32 +0.3
4,392,947 + AO356_19590 0.32 +0.1
4,392,947 + AO356_19590 0.32 -0.3
4,392,948 - AO356_19590 0.32 +0.3
4,392,948 - AO356_19590 0.32 -0.3
4,392,948 - AO356_19590 0.32 -0.0
4,392,948 - AO356_19590 0.32 -0.2
4,392,948 - AO356_19590 0.32 -1.4
4,392,951 + AO356_19590 0.33 +0.8
4,392,952 - AO356_19590 0.33 -0.8
4,392,952 - AO356_19590 0.33 -0.4
4,392,952 - AO356_19590 0.33 +0.2
4,392,998 + AO356_19590 0.38 -1.5
4,392,998 + AO356_19590 0.38 +0.9
4,392,998 + AO356_19590 0.38 +0.6
4,392,998 + AO356_19590 0.38 +0.3
4,392,999 - AO356_19590 0.38 -0.8
4,392,999 - AO356_19590 0.38 +0.8
4,392,999 - AO356_19590 0.38 -0.2
4,392,999 - AO356_19590 0.38 +0.4
4,392,999 - AO356_19590 0.38 +0.9
4,392,999 - AO356_19590 0.38 +0.9
4,392,999 - AO356_19590 0.38 +0.6
4,393,091 + AO356_19590 0.50 +1.1
4,393,091 + AO356_19590 0.50 +0.1
4,393,092 - AO356_19590 0.50 +1.2
4,393,092 - AO356_19590 0.50 +0.3
4,393,092 - AO356_19590 0.50 +0.8
4,393,092 - AO356_19590 0.50 -0.5
4,393,092 - AO356_19590 0.50 -0.5
4,393,092 - AO356_19590 0.50 -0.5
4,393,109 + AO356_19590 0.52 +0.7
4,393,110 - AO356_19590 0.52 +0.8
4,393,172 + AO356_19590 0.59 +0.2
4,393,172 + AO356_19590 0.59 -0.1
4,393,172 + AO356_19590 0.59 +0.3
4,393,172 + AO356_19590 0.59 +0.7
4,393,173 - AO356_19590 0.60 +1.1
4,393,187 + AO356_19590 0.61 +0.7
4,393,187 + AO356_19590 0.61 +0.3
4,393,187 + AO356_19590 0.61 +0.2
4,393,188 - AO356_19590 0.61 -0.4
4,393,188 - AO356_19590 0.61 +0.8
4,393,188 - AO356_19590 0.61 +0.1
4,393,191 - AO356_19590 0.62 +0.5
4,393,238 + AO356_19590 0.67 +1.4
4,393,253 + AO356_19590 0.69 -0.1
4,393,254 - AO356_19590 0.69 -0.3
4,393,254 - AO356_19590 0.69 +0.5
4,393,254 - AO356_19590 0.69 -0.1
4,393,292 + AO356_19590 0.74 -1.0
4,393,472 + +1.3
4,393,472 + -0.1
4,393,473 - -0.9
4,393,473 - +0.0
4,393,473 - +1.4
4,393,473 - -2.7
4,393,507 - -1.3
4,393,507 - +0.6
4,393,554 + +0.7
4,393,555 - +0.2
4,393,763 + AO356_19595 0.26 +0.8
4,394,053 + AO356_19595 0.58 +0.6
4,394,203 + AO356_19595 0.75 +0.1
4,394,203 + AO356_19595 0.75 -0.1
4,394,204 - AO356_19595 0.75 +0.4
4,394,204 - AO356_19595 0.75 +0.5
4,394,429 + +0.7
4,394,429 + +0.0
4,394,429 + -0.6
4,394,429 + -0.5
4,394,429 + -0.0
4,394,429 + +0.4
4,394,429 + +1.0
4,394,429 + +0.8
4,394,429 + -0.3
4,394,429 + +0.9
4,394,429 + +0.7
4,394,429 + +1.4
4,394,430 - +0.5
4,394,430 - +0.5
4,394,430 - +0.2
4,394,430 - -0.7
4,394,430 - -0.2
4,394,430 - +0.1
4,394,430 - -1.3
4,394,430 - +0.3
4,394,430 - -0.1
4,394,430 - +1.0
4,394,430 - -1.0
4,394,430 - +0.1
4,394,430 - -2.6
4,394,533 + +0.3
4,394,542 + -0.4
4,394,543 - -0.6
4,394,543 - -0.3
4,394,618 + +0.3
4,394,619 - -0.9
4,394,619 - -0.0
4,394,830 + AO356_19600 0.20 +0.6
4,394,830 + AO356_19600 0.20 +1.5
4,394,830 + AO356_19600 0.20 -0.3
4,394,831 - AO356_19600 0.20 +0.3
4,394,831 - AO356_19600 0.20 +0.5
4,394,944 + AO356_19600 0.28 -1.0
4,394,945 - AO356_19600 0.29 -0.7
4,394,945 - AO356_19600 0.29 +0.9

Or see this region's nucleotide sequence