Experiment: Vanillin 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_07010 and AO356_07015 are separated by 0 nucleotides AO356_07015 and AO356_07020 are separated by 7 nucleotides AO356_07020 and AO356_07025 overlap by 14 nucleotides
AO356_07010: AO356_07010 - D-arabinose 5-phosphate isomerase, at 1,548,712 to 1,549,686
_07010
AO356_07015: AO356_07015 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, at 1,549,687 to 1,550,211
_07015
AO356_07020: AO356_07020 - LPS export ABC transporter periplasmic protein LptC, at 1,550,219 to 1,550,788
_07020
AO356_07025: AO356_07025 - lipopolysaccharide transport periplasmic protein LptA, at 1,550,775 to 1,551,320
_07025
Position (kb)
1549
1550
1551 Strain fitness (log2 ratio)
-1
0
1 at 1548.697 kb on + strand at 1548.699 kb on + strand at 1548.699 kb on + strand at 1548.699 kb on + strand at 1548.699 kb on + strand at 1549.684 kb on + strand at 1549.684 kb on + strand at 1549.684 kb on + strand at 1549.684 kb on + strand at 1549.684 kb on + strand at 1550.218 kb on + strand at 1550.218 kb on + strand at 1550.218 kb on + strand at 1550.654 kb on + strand, within AO356_07020 at 1550.700 kb on + strand, within AO356_07020 at 1550.763 kb on + strand at 1550.763 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 2.5 mM remove 1,548,697 + -0.1 1,548,699 + -0.8 1,548,699 + -1.1 1,548,699 + +0.7 1,548,699 + +0.5 1,549,684 + -0.3 1,549,684 + -0.1 1,549,684 + -0.8 1,549,684 + -0.4 1,549,684 + +0.4 1,550,218 + -0.4 1,550,218 + +0.9 1,550,218 + -0.2 1,550,654 + AO356_07020 0.76 +0.0 1,550,700 + AO356_07020 0.84 -0.7 1,550,763 + -0.6 1,550,763 + +1.0
Or see this region's nucleotide sequence