Experiment: Vanillin 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_04225 and AO356_04230 are separated by 150 nucleotides AO356_04230 and AO356_04235 are separated by 50 nucleotides AO356_04235 and AO356_04240 are separated by 14 nucleotides
AO356_04225: AO356_04225 - FMN-dependent NADH-azoreductase, at 960,183 to 960,782
_04225
AO356_04230: AO356_04230 - 3-phosphoglycerate kinase, at 960,933 to 961,247
_04230
AO356_04235: AO356_04235 - LysR family transcriptional regulator, at 961,298 to 962,221
_04235
AO356_04240: AO356_04240 - 3-oxoadipate enol-lactonase, at 962,236 to 963,039
_04240
Position (kb) 960
961
962 Strain fitness (log2 ratio) -2
-1
0
1
2 at 959.951 kb on + strand at 959.961 kb on - strand at 959.961 kb on - strand at 959.961 kb on - strand at 959.974 kb on + strand at 960.026 kb on - strand at 960.093 kb on + strand at 960.093 kb on + strand at 960.093 kb on + strand at 960.093 kb on + strand at 960.093 kb on + strand at 960.093 kb on + strand at 960.093 kb on + strand at 960.093 kb on + strand at 960.093 kb on + strand at 960.093 kb on + strand at 960.093 kb on + strand at 960.093 kb on + strand at 960.094 kb on - strand at 960.094 kb on - strand at 960.094 kb on - strand at 960.094 kb on - strand at 960.094 kb on - strand at 960.094 kb on - strand at 960.094 kb on - strand at 960.149 kb on + strand at 960.150 kb on - strand at 960.150 kb on - strand at 960.150 kb on - strand at 960.316 kb on + strand, within AO356_04225 at 960.316 kb on + strand, within AO356_04225 at 960.421 kb on + strand, within AO356_04225 at 960.422 kb on - strand, within AO356_04225 at 960.422 kb on - strand, within AO356_04225 at 960.422 kb on - strand, within AO356_04225 at 960.422 kb on - strand, within AO356_04225 at 960.493 kb on + strand, within AO356_04225 at 960.493 kb on + strand, within AO356_04225 at 960.494 kb on - strand, within AO356_04225 at 960.494 kb on - strand, within AO356_04225 at 960.494 kb on - strand, within AO356_04225 at 960.789 kb on + strand at 960.790 kb on - strand at 960.790 kb on - strand at 960.790 kb on - strand at 960.831 kb on + strand at 960.832 kb on - strand at 960.864 kb on - strand at 961.096 kb on + strand, within AO356_04230 at 961.096 kb on + strand, within AO356_04230 at 961.096 kb on + strand, within AO356_04230 at 961.097 kb on - strand, within AO356_04230 at 961.139 kb on - strand, within AO356_04230 at 961.147 kb on + strand, within AO356_04230 at 961.148 kb on - strand, within AO356_04230 at 961.279 kb on - strand at 961.279 kb on - strand at 961.279 kb on - strand at 961.412 kb on + strand, within AO356_04235 at 961.412 kb on + strand, within AO356_04235 at 962.064 kb on + strand, within AO356_04235 at 962.065 kb on - strand, within AO356_04235 at 962.102 kb on + strand, within AO356_04235 at 962.102 kb on + strand, within AO356_04235 at 962.102 kb on + strand, within AO356_04235 at 962.103 kb on - strand, within AO356_04235 at 962.103 kb on - strand, within AO356_04235 at 962.242 kb on + strand at 962.242 kb on + strand at 962.243 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 2.5 mM remove 959,951 + +0.7 959,961 - +0.7 959,961 - +0.3 959,961 - +1.0 959,974 + -0.1 960,026 - -1.3 960,093 + +0.6 960,093 + -0.8 960,093 + +0.9 960,093 + +1.1 960,093 + -0.1 960,093 + -1.8 960,093 + +1.1 960,093 + +1.2 960,093 + +0.5 960,093 + -0.2 960,093 + +0.9 960,093 + -0.5 960,094 - +0.2 960,094 - -1.8 960,094 - +0.4 960,094 - +0.0 960,094 - +0.0 960,094 - -0.7 960,094 - +0.5 960,149 + +0.4 960,150 - -0.4 960,150 - +0.8 960,150 - +0.2 960,316 + AO356_04225 0.22 +1.1 960,316 + AO356_04225 0.22 +0.7 960,421 + AO356_04225 0.40 +1.0 960,422 - AO356_04225 0.40 -1.1 960,422 - AO356_04225 0.40 -0.6 960,422 - AO356_04225 0.40 +0.7 960,422 - AO356_04225 0.40 +1.4 960,493 + AO356_04225 0.52 -0.2 960,493 + AO356_04225 0.52 +1.0 960,494 - AO356_04225 0.52 +0.2 960,494 - AO356_04225 0.52 +0.2 960,494 - AO356_04225 0.52 +0.4 960,789 + +1.8 960,790 - +1.4 960,790 - +1.4 960,790 - -0.1 960,831 + +0.4 960,832 - -0.7 960,864 - -0.8 961,096 + AO356_04230 0.52 +0.0 961,096 + AO356_04230 0.52 +0.1 961,096 + AO356_04230 0.52 +0.7 961,097 - AO356_04230 0.52 -1.3 961,139 - AO356_04230 0.65 -0.6 961,147 + AO356_04230 0.68 +0.3 961,148 - AO356_04230 0.68 -0.8 961,279 - +0.6 961,279 - -0.2 961,279 - -0.2 961,412 + AO356_04235 0.12 -1.3 961,412 + AO356_04235 0.12 -0.2 962,064 + AO356_04235 0.83 -0.7 962,065 - AO356_04235 0.83 -0.1 962,102 + AO356_04235 0.87 -0.1 962,102 + AO356_04235 0.87 -0.2 962,102 + AO356_04235 0.87 +0.2 962,103 - AO356_04235 0.87 -0.7 962,103 - AO356_04235 0.87 +0.3 962,242 + -0.1 962,242 + +0.0 962,243 - +0.8
Or see this region's nucleotide sequence