Experiment: Vanillin 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_01235 and AO356_01240 are separated by 27 nucleotides AO356_01240 and AO356_01245 are separated by 157 nucleotides
AO356_01235: AO356_01235 - MFS transporter, at 282,944 to 284,293
_01235
AO356_01240: AO356_01240 - glucarate dehydratase, at 284,321 to 285,664
_01240
AO356_01245: AO356_01245 - glycogen branching protein, at 285,822 to 288,056
_01245
Position (kb) 284
285
286 Strain fitness (log2 ratio) -1
0
1
2 at 283.352 kb on + strand, within AO356_01235 at 283.352 kb on + strand, within AO356_01235 at 283.353 kb on - strand, within AO356_01235 at 283.353 kb on - strand, within AO356_01235 at 283.355 kb on + strand, within AO356_01235 at 283.355 kb on + strand, within AO356_01235 at 283.505 kb on + strand, within AO356_01235 at 283.506 kb on - strand, within AO356_01235 at 283.724 kb on + strand, within AO356_01235 at 283.724 kb on + strand, within AO356_01235 at 283.725 kb on - strand, within AO356_01235 at 283.748 kb on + strand, within AO356_01235 at 283.748 kb on + strand, within AO356_01235 at 283.748 kb on + strand, within AO356_01235 at 283.749 kb on - strand, within AO356_01235 at 283.749 kb on - strand, within AO356_01235 at 283.749 kb on - strand, within AO356_01235 at 283.859 kb on + strand, within AO356_01235 at 283.859 kb on + strand, within AO356_01235 at 283.860 kb on - strand, within AO356_01235 at 283.860 kb on - strand, within AO356_01235 at 284.049 kb on - strand, within AO356_01235 at 284.049 kb on - strand, within AO356_01235 at 284.316 kb on + strand at 284.316 kb on + strand at 284.317 kb on - strand at 284.317 kb on - strand at 284.317 kb on - strand at 284.317 kb on - strand at 284.317 kb on - strand at 284.317 kb on - strand at 284.694 kb on + strand, within AO356_01240 at 284.716 kb on - strand, within AO356_01240 at 284.716 kb on - strand, within AO356_01240 at 284.784 kb on - strand, within AO356_01240 at 284.816 kb on + strand, within AO356_01240 at 285.563 kb on + strand at 285.563 kb on + strand at 285.564 kb on - strand at 285.564 kb on - strand at 285.823 kb on + strand at 285.823 kb on + strand at 285.824 kb on - strand at 285.824 kb on - strand at 285.824 kb on - strand at 285.934 kb on + strand at 285.950 kb on - strand at 285.950 kb on - strand at 286.061 kb on + strand, within AO356_01245 at 286.091 kb on - strand, within AO356_01245 at 286.342 kb on + strand, within AO356_01245 at 286.462 kb on + strand, within AO356_01245 at 286.462 kb on + strand, within AO356_01245 at 286.463 kb on - strand, within AO356_01245 at 286.463 kb on - strand, within AO356_01245 at 286.463 kb on - strand, within AO356_01245 at 286.463 kb on - strand, within AO356_01245 at 286.525 kb on + strand, within AO356_01245 at 286.525 kb on + strand, within AO356_01245 at 286.564 kb on + strand, within AO356_01245
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 2.5 mM remove 283,352 + AO356_01235 0.30 +0.2 283,352 + AO356_01235 0.30 +0.6 283,353 - AO356_01235 0.30 +0.2 283,353 - AO356_01235 0.30 -0.4 283,355 + AO356_01235 0.30 +0.5 283,355 + AO356_01235 0.30 -0.3 283,505 + AO356_01235 0.42 +0.6 283,506 - AO356_01235 0.42 +0.3 283,724 + AO356_01235 0.58 -0.1 283,724 + AO356_01235 0.58 +0.0 283,725 - AO356_01235 0.58 +0.9 283,748 + AO356_01235 0.60 +0.4 283,748 + AO356_01235 0.60 +0.4 283,748 + AO356_01235 0.60 -0.7 283,749 - AO356_01235 0.60 +0.7 283,749 - AO356_01235 0.60 +0.2 283,749 - AO356_01235 0.60 -0.1 283,859 + AO356_01235 0.68 +0.7 283,859 + AO356_01235 0.68 +0.8 283,860 - AO356_01235 0.68 +0.6 283,860 - AO356_01235 0.68 +0.3 284,049 - AO356_01235 0.82 -0.8 284,049 - AO356_01235 0.82 +0.6 284,316 + +0.3 284,316 + +0.1 284,317 - +0.7 284,317 - +0.0 284,317 - -0.6 284,317 - +0.1 284,317 - +0.3 284,317 - -1.0 284,694 + AO356_01240 0.28 +0.8 284,716 - AO356_01240 0.29 +1.7 284,716 - AO356_01240 0.29 +0.4 284,784 - AO356_01240 0.34 +0.5 284,816 + AO356_01240 0.37 -0.4 285,563 + -0.6 285,563 + +0.0 285,564 - +0.9 285,564 - -0.3 285,823 + +2.3 285,823 + -0.1 285,824 - -0.6 285,824 - +1.3 285,824 - -0.9 285,934 + +1.0 285,950 - +0.9 285,950 - +0.6 286,061 + AO356_01245 0.11 +1.0 286,091 - AO356_01245 0.12 +1.4 286,342 + AO356_01245 0.23 -0.5 286,462 + AO356_01245 0.29 +0.2 286,462 + AO356_01245 0.29 -1.3 286,463 - AO356_01245 0.29 +0.3 286,463 - AO356_01245 0.29 -0.7 286,463 - AO356_01245 0.29 -0.3 286,463 - AO356_01245 0.29 +0.8 286,525 + AO356_01245 0.31 +0.2 286,525 + AO356_01245 0.31 +0.1 286,564 + AO356_01245 0.33 +0.2
Or see this region's nucleotide sequence