Strain Fitness in Shewanella loihica PV-4 around Shew_3421

Experiment: syringaldehyde 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3420 and Shew_3421 are separated by 8 nucleotidesShew_3421 and Shew_3422 are separated by 116 nucleotides Shew_3420: Shew_3420 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 4,075,470 to 4,076,951 _3420 Shew_3421: Shew_3421 - hypothetical protein (RefSeq), at 4,076,960 to 4,077,235 _3421 Shew_3422: Shew_3422 - uroporphyrinogen decarboxylase (RefSeq), at 4,077,352 to 4,078,416 _3422 Position (kb) 4076 4077 4078Strain fitness (log2 ratio) -1 0 1at 4076.216 kb on + strand, within Shew_3420at 4076.464 kb on - strand, within Shew_3420at 4076.562 kb on - strand, within Shew_3420at 4076.562 kb on - strand, within Shew_3420at 4076.790 kb on - strand, within Shew_3420at 4077.049 kb on - strand, within Shew_3421

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Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 1 mM
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4,076,216 + Shew_3420 0.50 +1.3
4,076,464 - Shew_3420 0.67 +0.6
4,076,562 - Shew_3420 0.74 +0.8
4,076,562 - Shew_3420 0.74 -0.3
4,076,790 - Shew_3420 0.89 +0.3
4,077,049 - Shew_3421 0.32 -0.2

Or see this region's nucleotide sequence