Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0798 and Shew_0799 are separated by 304 nucleotides Shew_0799 and Shew_0800 are separated by 33 nucleotides Shew_0800 and rumB are separated by 42 nucleotides
Shew_0798: Shew_0798 - hypothetical protein (RefSeq), at 910,987 to 911,424
_0798
Shew_0799: Shew_0799 - MarR family transcriptional regulator (RefSeq), at 911,729 to 912,214
_0799
Shew_0800: Shew_0800 - FAD dependent oxidoreductase (RefSeq), at 912,248 to 913,489
_0800
Shew_0801: rumB - 23S rRNA methyluridine methyltransferase (RefSeq), at 913,532 to 914,671
rumB
Position (kb) 912
913
914 Strain fitness (log2 ratio) -1
0
1 at 911.252 kb on - strand, within Shew_0798 at 911.575 kb on - strand at 911.705 kb on - strand at 912.110 kb on + strand, within Shew_0799 at 912.211 kb on - strand at 912.330 kb on + strand at 912.406 kb on + strand, within Shew_0800 at 912.607 kb on + strand, within Shew_0800 at 912.607 kb on + strand, within Shew_0800 at 912.625 kb on - strand, within Shew_0800 at 912.750 kb on + strand, within Shew_0800 at 912.758 kb on - strand, within Shew_0800 at 912.803 kb on - strand, within Shew_0800 at 912.891 kb on - strand, within Shew_0800 at 913.830 kb on + strand, within rumB at 913.838 kb on - strand, within rumB at 913.838 kb on - strand, within rumB at 913.890 kb on - strand, within rumB at 913.932 kb on - strand, within rumB at 914.003 kb on - strand, within rumB at 914.190 kb on + strand, within rumB at 914.209 kb on + strand, within rumB at 914.308 kb on - strand, within rumB
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 911,252 - Shew_0798 0.61 -0.4 911,575 - +0.5 911,705 - +0.6 912,110 + Shew_0799 0.78 +0.3 912,211 - +0.1 912,330 + -0.3 912,406 + Shew_0800 0.13 +0.1 912,607 + Shew_0800 0.29 -0.1 912,607 + Shew_0800 0.29 +0.1 912,625 - Shew_0800 0.30 -0.5 912,750 + Shew_0800 0.40 -0.3 912,758 - Shew_0800 0.41 +0.2 912,803 - Shew_0800 0.45 +0.1 912,891 - Shew_0800 0.52 -0.8 913,830 + rumB Shew_0801 0.26 +0.1 913,838 - rumB Shew_0801 0.27 +0.3 913,838 - rumB Shew_0801 0.27 +0.5 913,890 - rumB Shew_0801 0.31 -0.6 913,932 - rumB Shew_0801 0.35 -0.5 914,003 - rumB Shew_0801 0.41 +0.4 914,190 + rumB Shew_0801 0.58 +0.9 914,209 + rumB Shew_0801 0.59 -0.2 914,308 - rumB Shew_0801 0.68 +0.4
Or see this region's nucleotide sequence