Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0454 and Shew_0455 are separated by 165 nucleotides Shew_0455 and Shew_0456 are separated by 47 nucleotides
Shew_0454: Shew_0454 - enoyl-CoA hydratase (RefSeq), at 504,816 to 505,625
_0454
Shew_0455: Shew_0455 - hypothetical protein (RefSeq), at 505,791 to 506,294
_0455
Shew_0456: Shew_0456 - hypothetical protein (RefSeq), at 506,342 to 507,226
_0456
Position (kb) 505
506
507 Strain fitness (log2 ratio) -1
0
1 at 504.839 kb on + strand at 504.842 kb on - strand at 504.862 kb on + strand at 504.911 kb on + strand, within Shew_0454 at 505.019 kb on - strand, within Shew_0454 at 505.324 kb on + strand, within Shew_0454 at 506.038 kb on + strand, within Shew_0455 at 506.209 kb on - strand, within Shew_0455 at 506.383 kb on - strand at 506.406 kb on + strand at 506.542 kb on - strand, within Shew_0456 at 506.561 kb on - strand, within Shew_0456 at 506.617 kb on - strand, within Shew_0456 at 506.621 kb on + strand, within Shew_0456 at 506.634 kb on - strand, within Shew_0456 at 506.746 kb on + strand, within Shew_0456 at 506.861 kb on + strand, within Shew_0456 at 506.919 kb on - strand, within Shew_0456 at 506.933 kb on + strand, within Shew_0456 at 507.040 kb on + strand, within Shew_0456 at 507.079 kb on + strand, within Shew_0456 at 507.137 kb on - strand, within Shew_0456 at 507.142 kb on - strand at 507.192 kb on + strand at 507.277 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 504,839 + +0.3 504,842 - +0.3 504,862 + +0.2 504,911 + Shew_0454 0.12 +0.4 505,019 - Shew_0454 0.25 +0.0 505,324 + Shew_0454 0.63 +0.0 506,038 + Shew_0455 0.49 +0.1 506,209 - Shew_0455 0.83 +0.9 506,383 - -0.4 506,406 + -0.2 506,542 - Shew_0456 0.23 -0.3 506,561 - Shew_0456 0.25 -0.0 506,617 - Shew_0456 0.31 +0.1 506,621 + Shew_0456 0.32 +0.1 506,634 - Shew_0456 0.33 -0.1 506,746 + Shew_0456 0.46 -0.0 506,861 + Shew_0456 0.59 +1.2 506,919 - Shew_0456 0.65 -0.1 506,933 + Shew_0456 0.67 +0.3 507,040 + Shew_0456 0.79 -0.0 507,079 + Shew_0456 0.83 +0.5 507,137 - Shew_0456 0.90 -0.2 507,142 - +0.0 507,192 + +0.0 507,277 - -0.1
Or see this region's nucleotide sequence