Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0239 and Shew_0240 are separated by 64 nucleotides Shew_0240 and Shew_0241 overlap by 1 nucleotides Shew_0241 and Shew_0242 are separated by 10 nucleotides
Shew_0239: Shew_0239 - formate dehydrogenase, gamma subunit (RefSeq), at 255,646 to 256,626
_0239
Shew_0240: Shew_0240 - cytoplasmic chaperone TorD family protein (RefSeq), at 256,691 to 257,305
_0240
Shew_0241: Shew_0241 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq), at 257,305 to 257,850
_0241
Shew_0242: Shew_0242 - molydopterin dinucleotide-binding region (RefSeq), at 257,861 to 260,074
_0242
Position (kb) 257
258 Strain fitness (log2 ratio) -2
-1
0
1 at 256.379 kb on - strand, within Shew_0239 at 256.563 kb on + strand at 256.571 kb on - strand at 257.060 kb on + strand, within Shew_0240 at 257.281 kb on + strand at 257.567 kb on - strand, within Shew_0241 at 257.567 kb on - strand, within Shew_0241 at 257.584 kb on + strand, within Shew_0241 at 257.806 kb on + strand at 257.814 kb on - strand at 258.004 kb on + strand at 258.012 kb on - strand at 258.070 kb on + strand at 258.070 kb on + strand at 258.362 kb on - strand, within Shew_0242 at 258.403 kb on + strand, within Shew_0242 at 258.403 kb on + strand, within Shew_0242 at 258.411 kb on - strand, within Shew_0242 at 258.424 kb on - strand, within Shew_0242 at 258.484 kb on - strand, within Shew_0242 at 258.493 kb on - strand, within Shew_0242 at 258.493 kb on - strand, within Shew_0242 at 258.602 kb on + strand, within Shew_0242
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 256,379 - Shew_0239 0.75 -0.1 256,563 + +0.2 256,571 - -0.1 257,060 + Shew_0240 0.60 +0.3 257,281 + +0.6 257,567 - Shew_0241 0.48 -1.8 257,567 - Shew_0241 0.48 +0.1 257,584 + Shew_0241 0.51 +0.1 257,806 + +0.9 257,814 - +0.2 258,004 + +0.3 258,012 - +0.0 258,070 + -0.1 258,070 + -0.3 258,362 - Shew_0242 0.23 -0.7 258,403 + Shew_0242 0.24 +0.8 258,403 + Shew_0242 0.24 -0.2 258,411 - Shew_0242 0.25 -0.3 258,424 - Shew_0242 0.25 -0.0 258,484 - Shew_0242 0.28 -0.2 258,493 - Shew_0242 0.29 +0.0 258,493 - Shew_0242 0.29 -0.3 258,602 + Shew_0242 0.33 +0.1
Or see this region's nucleotide sequence