Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0121 and Shew_0122 are separated by 15 nucleotides Shew_0122 and Shew_0123 overlap by 4 nucleotides Shew_0123 and Shew_0124 are separated by 1 nucleotides
Shew_0121: Shew_0121 - hypothetical protein (RefSeq), at 131,798 to 131,974
_0121
Shew_0122: Shew_0122 - cytochrome c oxidase, subunit III (RefSeq), at 131,990 to 132,865
_0122
Shew_0123: Shew_0123 - cytochrome C oxidase assembly protein (RefSeq), at 132,862 to 133,431
_0123
Shew_0124: Shew_0124 - cytochrome-c oxidase (RefSeq), at 133,433 to 135,043
_0124
Position (kb) 132
133
134 Strain fitness (log2 ratio) -1
0
1 at 131.898 kb on + strand, within Shew_0121 at 131.949 kb on - strand, within Shew_0121 at 132.204 kb on + strand, within Shew_0122 at 132.244 kb on - strand, within Shew_0122 at 132.280 kb on + strand, within Shew_0122 at 132.343 kb on - strand, within Shew_0122 at 132.397 kb on + strand, within Shew_0122 at 132.410 kb on - strand, within Shew_0122 at 132.414 kb on + strand, within Shew_0122 at 132.422 kb on - strand, within Shew_0122 at 132.489 kb on - strand, within Shew_0122 at 132.521 kb on + strand, within Shew_0122 at 132.521 kb on + strand, within Shew_0122 at 132.545 kb on + strand, within Shew_0122 at 132.639 kb on - strand, within Shew_0122 at 132.669 kb on + strand, within Shew_0122 at 132.680 kb on + strand, within Shew_0122 at 132.737 kb on + strand, within Shew_0122 at 132.815 kb on - strand at 132.845 kb on - strand at 132.929 kb on - strand, within Shew_0123 at 132.949 kb on - strand, within Shew_0123 at 133.068 kb on + strand, within Shew_0123 at 133.068 kb on + strand, within Shew_0123 at 133.076 kb on - strand, within Shew_0123 at 133.093 kb on - strand, within Shew_0123 at 133.206 kb on - strand, within Shew_0123 at 133.391 kb on - strand at 133.435 kb on + strand at 133.463 kb on + strand at 133.786 kb on + strand, within Shew_0124 at 133.958 kb on + strand, within Shew_0124 at 133.977 kb on - strand, within Shew_0124 at 134.025 kb on - strand, within Shew_0124 at 134.117 kb on - strand, within Shew_0124 at 134.408 kb on - strand, within Shew_0124
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 131,898 + Shew_0121 0.56 +0.0 131,949 - Shew_0121 0.85 +0.4 132,204 + Shew_0122 0.24 +0.3 132,244 - Shew_0122 0.29 -0.1 132,280 + Shew_0122 0.33 -0.1 132,343 - Shew_0122 0.40 -0.1 132,397 + Shew_0122 0.46 -0.1 132,410 - Shew_0122 0.48 -0.2 132,414 + Shew_0122 0.48 -0.4 132,422 - Shew_0122 0.49 +0.0 132,489 - Shew_0122 0.57 +0.3 132,521 + Shew_0122 0.61 +0.7 132,521 + Shew_0122 0.61 +0.5 132,545 + Shew_0122 0.63 +0.1 132,639 - Shew_0122 0.74 +0.1 132,669 + Shew_0122 0.78 -0.0 132,680 + Shew_0122 0.79 -0.1 132,737 + Shew_0122 0.85 -0.2 132,815 - -0.3 132,845 - +0.2 132,929 - Shew_0123 0.12 -0.6 132,949 - Shew_0123 0.15 -0.2 133,068 + Shew_0123 0.36 -0.4 133,068 + Shew_0123 0.36 +0.2 133,076 - Shew_0123 0.38 -0.1 133,093 - Shew_0123 0.41 -0.1 133,206 - Shew_0123 0.60 +0.2 133,391 - -0.3 133,435 + +1.2 133,463 + +0.5 133,786 + Shew_0124 0.22 +0.9 133,958 + Shew_0124 0.33 -0.1 133,977 - Shew_0124 0.34 +1.4 134,025 - Shew_0124 0.37 +0.3 134,117 - Shew_0124 0.42 +0.3 134,408 - Shew_0124 0.61 +0.2
Or see this region's nucleotide sequence