Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1938

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1937 and Dshi_1938 are separated by 116 nucleotidesDshi_1938 and Dshi_1939 are separated by 116 nucleotidesDshi_1939 and Dshi_1940 are separated by 39 nucleotides Dshi_1937: Dshi_1937 - protein of unknown function DUF463 YcjX family protein (RefSeq), at 2,025,991 to 2,027,403 _1937 Dshi_1938: Dshi_1938 - tRNA pseudouridine synthase A (RefSeq), at 2,027,520 to 2,028,293 _1938 Dshi_1939: Dshi_1939 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 2,028,410 to 2,029,231 _1939 Dshi_1940: Dshi_1940 - ABC transporter related (RefSeq), at 2,029,271 to 2,030,071 _1940 Position (kb) 2027 2028 2029Strain fitness (log2 ratio) -2 -1 0 1at 2026.617 kb on - strand, within Dshi_1937at 2026.642 kb on - strand, within Dshi_1937at 2026.677 kb on + strand, within Dshi_1937at 2026.757 kb on - strand, within Dshi_1937at 2027.290 kb on + strandat 2027.298 kb on - strandat 2027.358 kb on - strandat 2027.358 kb on - strandat 2027.358 kb on - strandat 2027.439 kb on - strandat 2027.504 kb on + strandat 2027.515 kb on + strandat 2027.701 kb on - strand, within Dshi_1938at 2027.752 kb on - strand, within Dshi_1938at 2027.854 kb on - strand, within Dshi_1938at 2028.580 kb on - strand, within Dshi_1939at 2028.596 kb on - strand, within Dshi_1939at 2028.678 kb on + strand, within Dshi_1939at 2028.866 kb on - strand, within Dshi_1939at 2028.966 kb on - strand, within Dshi_1939at 2028.985 kb on - strand, within Dshi_1939at 2029.024 kb on + strand, within Dshi_1939at 2029.107 kb on - strand, within Dshi_1939at 2029.148 kb on + strand, within Dshi_1939at 2029.154 kb on - strandat 2029.173 kb on - strandat 2029.212 kb on + strandat 2029.261 kb on + strandat 2029.281 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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2,026,617 - Dshi_1937 0.44 -0.1
2,026,642 - Dshi_1937 0.46 -0.0
2,026,677 + Dshi_1937 0.49 -0.1
2,026,757 - Dshi_1937 0.54 -1.0
2,027,290 + -0.9
2,027,298 - -0.8
2,027,358 - -0.9
2,027,358 - -0.8
2,027,358 - +0.3
2,027,439 - +0.1
2,027,504 + -0.3
2,027,515 + -1.7
2,027,701 - Dshi_1938 0.23 -1.2
2,027,752 - Dshi_1938 0.30 -1.2
2,027,854 - Dshi_1938 0.43 -2.3
2,028,580 - Dshi_1939 0.21 +0.5
2,028,596 - Dshi_1939 0.23 -0.7
2,028,678 + Dshi_1939 0.33 -0.1
2,028,866 - Dshi_1939 0.55 +0.1
2,028,966 - Dshi_1939 0.68 -0.9
2,028,985 - Dshi_1939 0.70 -0.8
2,029,024 + Dshi_1939 0.75 +0.6
2,029,107 - Dshi_1939 0.85 -0.2
2,029,148 + Dshi_1939 0.90 -0.8
2,029,154 - -0.6
2,029,173 - +0.3
2,029,212 + +0.4
2,029,261 + +0.2
2,029,281 + -0.0

Or see this region's nucleotide sequence