Experiment: Lactate-Sulfate (60-30 mM) + 0.1% Yeast Extract (MoYLS4)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0483 and DVU0484 are separated by 202 nucleotides DVU0484 and DVU0485 overlap by 4 nucleotides DVU0485 and DVU0486 are separated by 43 nucleotides DVU0486 and purE are separated by 299 nucleotides
DVU0483: DVU0483 - DNA mismatch repair protein MutL, putative (TIGR), at 549,943 to 552,177
DVU0483
DVU0484: DVU0484 - ABC transporter, ATP-binding protein (TIGR), at 552,380 to 553,174
DVU0484
DVU0485: DVU0485 - membrane protein, putative (TIGR), at 553,171 to 553,956
DVU0485
DVU0486: DVU0486 - hypothetical protein (TIGR), at 554,000 to 554,329
DVU0486
DVU0487: purE - phosphoribosylaminoimidazole carboxylase, catalytic subunit (TIGR), at 554,629 to 555,129
purE
Position (kb) 553
554 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 552.194 kb on - strand at 552.210 kb on - strand at 552.217 kb on - strand at 552.250 kb on + strand at 552.333 kb on + strand at 552.341 kb on - strand at 552.341 kb on - strand at 552.341 kb on - strand at 552.341 kb on - strand at 552.360 kb on + strand at 552.360 kb on + strand at 552.374 kb on + strand at 552.374 kb on - strand at 552.460 kb on - strand, within DVU0484 at 552.540 kb on + strand, within DVU0484 at 552.622 kb on + strand, within DVU0484 at 552.706 kb on + strand, within DVU0484 at 552.778 kb on - strand, within DVU0484 at 552.804 kb on + strand, within DVU0484 at 552.812 kb on - strand, within DVU0484 at 552.826 kb on + strand, within DVU0484 at 552.829 kb on - strand, within DVU0484 at 553.016 kb on + strand, within DVU0484 at 553.144 kb on + strand at 553.275 kb on - strand, within DVU0485 at 553.305 kb on - strand, within DVU0485 at 553.389 kb on + strand, within DVU0485 at 553.390 kb on + strand, within DVU0485 at 553.398 kb on - strand, within DVU0485 at 553.398 kb on - strand, within DVU0485 at 553.427 kb on + strand, within DVU0485 at 553.442 kb on - strand, within DVU0485 at 553.467 kb on + strand, within DVU0485 at 553.482 kb on - strand, within DVU0485 at 553.554 kb on + strand, within DVU0485 at 553.554 kb on - strand, within DVU0485 at 553.620 kb on - strand, within DVU0485 at 553.631 kb on - strand, within DVU0485 at 553.633 kb on - strand, within DVU0485 at 553.662 kb on - strand, within DVU0485 at 553.679 kb on - strand, within DVU0485 at 553.800 kb on + strand, within DVU0485 at 553.809 kb on - strand, within DVU0485 at 553.902 kb on - strand at 553.902 kb on - strand at 553.957 kb on + strand at 553.970 kb on - strand at 554.005 kb on - strand at 554.089 kb on + strand, within DVU0486 at 554.149 kb on - strand, within DVU0486 at 554.162 kb on + strand, within DVU0486 at 554.250 kb on + strand, within DVU0486 at 554.268 kb on - strand, within DVU0486 at 554.331 kb on - strand at 554.408 kb on + strand at 554.423 kb on + strand at 554.457 kb on - strand at 554.514 kb on + strand at 554.631 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-Sulfate (60-30 mM) + 0.1% Yeast Extract (MoYLS4) remove 552,194 - -1.3 552,210 - -1.8 552,217 - +0.0 552,250 + +0.3 552,333 + -0.3 552,341 - +0.1 552,341 - +0.3 552,341 - -1.4 552,341 - -1.3 552,360 + +0.5 552,360 + -0.5 552,374 + +0.8 552,374 - -0.2 552,460 - DVU0484 0.10 -0.3 552,540 + DVU0484 0.20 -0.8 552,622 + DVU0484 0.30 +1.0 552,706 + DVU0484 0.41 -0.6 552,778 - DVU0484 0.50 +0.0 552,804 + DVU0484 0.53 -0.3 552,812 - DVU0484 0.54 -0.1 552,826 + DVU0484 0.56 -1.0 552,829 - DVU0484 0.56 +0.3 553,016 + DVU0484 0.80 -0.8 553,144 + +0.2 553,275 - DVU0485 0.13 -0.1 553,305 - DVU0485 0.17 +0.3 553,389 + DVU0485 0.28 -0.0 553,390 + DVU0485 0.28 -0.1 553,398 - DVU0485 0.29 +0.1 553,398 - DVU0485 0.29 +0.2 553,427 + DVU0485 0.33 +0.0 553,442 - DVU0485 0.34 -0.4 553,467 + DVU0485 0.38 -0.6 553,482 - DVU0485 0.40 +0.1 553,554 + DVU0485 0.49 +1.0 553,554 - DVU0485 0.49 +0.5 553,620 - DVU0485 0.57 -0.8 553,631 - DVU0485 0.59 +0.9 553,633 - DVU0485 0.59 +0.3 553,662 - DVU0485 0.62 -0.1 553,679 - DVU0485 0.65 -0.2 553,800 + DVU0485 0.80 -1.1 553,809 - DVU0485 0.81 -2.1 553,902 - -0.1 553,902 - -0.4 553,957 + -1.1 553,970 - -0.2 554,005 - -3.0 554,089 + DVU0486 0.27 +0.5 554,149 - DVU0486 0.45 +0.0 554,162 + DVU0486 0.49 -0.1 554,250 + DVU0486 0.76 +0.5 554,268 - DVU0486 0.81 +0.0 554,331 - -0.0 554,408 + -1.5 554,423 + +0.2 554,457 - -1.7 554,514 + -0.4 554,631 + -1.2
Or see this region's nucleotide sequence