Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06510

Experiment: H2 deepwell acetate and vitamin FREE

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS06505 and MMP_RS06510 are separated by 48 nucleotidesMMP_RS06510 and MMP_RS06515 are separated by 96 nucleotidesMMP_RS06515 and MMP_RS06520 are separated by 138 nucleotides MMP_RS06505: MMP_RS06505 - Glu-tRNA(Gln) amidotransferase subunit GatE, at 1,248,402 to 1,250,297 _RS06505 MMP_RS06510: MMP_RS06510 - Glu-tRNA(Gln) amidotransferase subunit GatD, at 1,250,346 to 1,251,602 _RS06510 MMP_RS06515: MMP_RS06515 - UPF0489 family protein, at 1,251,699 to 1,252,409 _RS06515 MMP_RS06520: MMP_RS06520 - DUF1786 domain-containing protein, at 1,252,548 to 1,253,564 _RS06520 Position (kb) 1250 1251 1252Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1249.718 kb on - strandat 1250.832 kb on + strandat 1251.556 kb on - strandat 1251.626 kb on - strandat 1251.661 kb on + strandat 1251.687 kb on + strandat 1251.701 kb on + strandat 1251.989 kb on + strand, within MMP_RS06515at 1252.104 kb on + strand, within MMP_RS06515at 1252.277 kb on - strand, within MMP_RS06515at 1252.460 kb on - strandat 1252.461 kb on + strandat 1252.558 kb on - strandat 1252.559 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 deepwell acetate and vitamin FREE
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1,249,718 - -3.4
1,250,832 + -2.7
1,251,556 - -1.9
1,251,626 - -2.7
1,251,661 + -2.3
1,251,687 + +0.5
1,251,701 + +1.1
1,251,989 + MMP_RS06515 0.41 +0.2
1,252,104 + MMP_RS06515 0.57 +2.3
1,252,277 - MMP_RS06515 0.81 +0.9
1,252,460 - +0.5
1,252,461 + -0.2
1,252,558 - -2.1
1,252,559 + -0.1

Or see this region's nucleotide sequence