Experiment: Min media with glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22425 and BPHYT_RS22430 are separated by 221 nucleotides BPHYT_RS22430 and BPHYT_RS22435 are separated by 10 nucleotides
BPHYT_RS22425: BPHYT_RS22425 - GntR family transcriptional regulator, at 585,250 to 586,665
_RS22425
BPHYT_RS22430: BPHYT_RS22430 - succinate-semialdehyde dehydrogenase, at 586,887 to 588,347
_RS22430
BPHYT_RS22435: BPHYT_RS22435 - 4-aminobutyrate aminotransferase, at 588,358 to 589,641
_RS22435
Position (kb) 586
587
588
589 Strain fitness (log2 ratio) -1
0
1 at 585.942 kb on + strand, within BPHYT_RS22425 at 586.188 kb on - strand, within BPHYT_RS22425 at 586.198 kb on + strand, within BPHYT_RS22425 at 586.759 kb on - strand at 586.811 kb on + strand at 586.910 kb on - strand at 586.925 kb on - strand at 586.925 kb on - strand at 587.083 kb on + strand, within BPHYT_RS22430 at 587.084 kb on - strand, within BPHYT_RS22430 at 587.084 kb on - strand, within BPHYT_RS22430 at 587.084 kb on - strand, within BPHYT_RS22430 at 587.452 kb on + strand, within BPHYT_RS22430 at 587.453 kb on - strand, within BPHYT_RS22430 at 587.453 kb on - strand, within BPHYT_RS22430 at 587.879 kb on + strand, within BPHYT_RS22430 at 587.879 kb on + strand, within BPHYT_RS22430 at 587.880 kb on - strand, within BPHYT_RS22430 at 588.007 kb on + strand, within BPHYT_RS22430 at 588.299 kb on - strand at 588.359 kb on + strand at 588.640 kb on + strand, within BPHYT_RS22435 at 588.752 kb on + strand, within BPHYT_RS22435 at 589.111 kb on + strand, within BPHYT_RS22435
Per-strain Table
Position Strand Gene LocusTag Fraction Min media with glucose remove 585,942 + BPHYT_RS22425 0.49 -1.0 586,188 - BPHYT_RS22425 0.66 -0.2 586,198 + BPHYT_RS22425 0.67 -1.2 586,759 - +0.5 586,811 + +0.0 586,910 - -0.4 586,925 - +0.2 586,925 - +0.2 587,083 + BPHYT_RS22430 0.13 -0.0 587,084 - BPHYT_RS22430 0.13 +0.1 587,084 - BPHYT_RS22430 0.13 -0.2 587,084 - BPHYT_RS22430 0.13 -0.0 587,452 + BPHYT_RS22430 0.39 -1.2 587,453 - BPHYT_RS22430 0.39 -0.1 587,453 - BPHYT_RS22430 0.39 +1.0 587,879 + BPHYT_RS22430 0.68 +0.1 587,879 + BPHYT_RS22430 0.68 -0.0 587,880 - BPHYT_RS22430 0.68 -0.8 588,007 + BPHYT_RS22430 0.77 +0.4 588,299 - +0.4 588,359 + -0.2 588,640 + BPHYT_RS22435 0.22 -0.9 588,752 + BPHYT_RS22435 0.31 -0.1 589,111 + BPHYT_RS22435 0.59 -0.1
Or see this region's nucleotide sequence