Experiment: Min media with glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01585 and BPHYT_RS01590 are separated by 14 nucleotides BPHYT_RS01590 and BPHYT_RS01595 overlap by 4 nucleotides
BPHYT_RS01585: BPHYT_RS01585 - major facilitator superfamily protein, at 359,625 to 361,019
_RS01585
BPHYT_RS01590: BPHYT_RS01590 - methionine biosynthesis protein MetW, at 361,034 to 361,642
_RS01590
BPHYT_RS01595: BPHYT_RS01595 - homoserine O-acetyltransferase, at 361,639 to 362,784
_RS01595
Position (kb) 361
362 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 360.372 kb on + strand, within BPHYT_RS01585 at 360.373 kb on - strand, within BPHYT_RS01585 at 360.511 kb on + strand, within BPHYT_RS01585 at 360.711 kb on + strand, within BPHYT_RS01585 at 360.712 kb on - strand, within BPHYT_RS01585 at 360.712 kb on - strand, within BPHYT_RS01585 at 360.803 kb on - strand, within BPHYT_RS01585 at 360.987 kb on - strand at 361.023 kb on + strand at 361.024 kb on - strand at 361.024 kb on - strand at 361.066 kb on + strand at 361.067 kb on - strand at 361.067 kb on - strand at 361.067 kb on - strand at 361.067 kb on - strand at 361.185 kb on - strand, within BPHYT_RS01590 at 361.185 kb on - strand, within BPHYT_RS01590 at 361.209 kb on + strand, within BPHYT_RS01590 at 361.209 kb on + strand, within BPHYT_RS01590 at 361.210 kb on - strand, within BPHYT_RS01590 at 361.621 kb on - strand at 361.663 kb on - strand at 361.663 kb on - strand at 361.663 kb on - strand at 361.674 kb on - strand at 361.694 kb on + strand at 361.751 kb on + strand at 361.752 kb on - strand at 361.752 kb on - strand at 361.757 kb on - strand, within BPHYT_RS01595 at 361.847 kb on + strand, within BPHYT_RS01595 at 361.847 kb on + strand, within BPHYT_RS01595 at 361.940 kb on + strand, within BPHYT_RS01595 at 361.941 kb on - strand, within BPHYT_RS01595 at 361.941 kb on - strand, within BPHYT_RS01595 at 361.958 kb on + strand, within BPHYT_RS01595 at 361.982 kb on + strand, within BPHYT_RS01595 at 361.991 kb on + strand, within BPHYT_RS01595 at 361.992 kb on - strand, within BPHYT_RS01595 at 361.992 kb on - strand, within BPHYT_RS01595 at 362.030 kb on + strand, within BPHYT_RS01595 at 362.030 kb on + strand, within BPHYT_RS01595 at 362.102 kb on + strand, within BPHYT_RS01595 at 362.102 kb on + strand, within BPHYT_RS01595 at 362.102 kb on + strand, within BPHYT_RS01595 at 362.102 kb on + strand, within BPHYT_RS01595 at 362.103 kb on - strand, within BPHYT_RS01595 at 362.165 kb on + strand, within BPHYT_RS01595 at 362.166 kb on - strand, within BPHYT_RS01595 at 362.166 kb on - strand, within BPHYT_RS01595 at 362.168 kb on + strand, within BPHYT_RS01595 at 362.169 kb on - strand, within BPHYT_RS01595 at 362.598 kb on - strand, within BPHYT_RS01595
Per-strain Table
Position Strand Gene LocusTag Fraction Min media with glucose remove 360,372 + BPHYT_RS01585 0.54 -0.7 360,373 - BPHYT_RS01585 0.54 -0.4 360,511 + BPHYT_RS01585 0.64 +0.4 360,711 + BPHYT_RS01585 0.78 -0.4 360,712 - BPHYT_RS01585 0.78 -0.4 360,712 - BPHYT_RS01585 0.78 -1.4 360,803 - BPHYT_RS01585 0.84 +0.6 360,987 - -0.1 361,023 + -1.2 361,024 - -0.1 361,024 - +0.2 361,066 + -0.1 361,067 - -1.5 361,067 - -1.7 361,067 - -1.5 361,067 - -4.1 361,185 - BPHYT_RS01590 0.25 -3.2 361,185 - BPHYT_RS01590 0.25 -5.8 361,209 + BPHYT_RS01590 0.29 -2.2 361,209 + BPHYT_RS01590 0.29 -4.1 361,210 - BPHYT_RS01590 0.29 -4.2 361,621 - -0.9 361,663 - -4.5 361,663 - -2.1 361,663 - -4.1 361,674 - -5.0 361,694 + -0.6 361,751 + -5.9 361,752 - -5.6 361,752 - -3.6 361,757 - BPHYT_RS01595 0.10 -1.6 361,847 + BPHYT_RS01595 0.18 -5.4 361,847 + BPHYT_RS01595 0.18 -5.4 361,940 + BPHYT_RS01595 0.26 -4.9 361,941 - BPHYT_RS01595 0.26 -2.9 361,941 - BPHYT_RS01595 0.26 -3.4 361,958 + BPHYT_RS01595 0.28 -6.2 361,982 + BPHYT_RS01595 0.30 -3.4 361,991 + BPHYT_RS01595 0.31 -4.6 361,992 - BPHYT_RS01595 0.31 -1.4 361,992 - BPHYT_RS01595 0.31 -4.3 362,030 + BPHYT_RS01595 0.34 -4.9 362,030 + BPHYT_RS01595 0.34 -3.8 362,102 + BPHYT_RS01595 0.40 -6.6 362,102 + BPHYT_RS01595 0.40 -4.9 362,102 + BPHYT_RS01595 0.40 -4.2 362,102 + BPHYT_RS01595 0.40 -5.4 362,103 - BPHYT_RS01595 0.40 -2.8 362,165 + BPHYT_RS01595 0.46 -4.3 362,166 - BPHYT_RS01595 0.46 -1.1 362,166 - BPHYT_RS01595 0.46 -2.5 362,168 + BPHYT_RS01595 0.46 -3.1 362,169 - BPHYT_RS01595 0.46 -1.9 362,598 - BPHYT_RS01595 0.84 -0.1
Or see this region's nucleotide sequence