Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_29285

Experiment: Vanillin 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_29280 and AO356_29285 are separated by 127 nucleotidesAO356_29285 and AO356_29290 are separated by 240 nucleotidesAO356_29290 and AO356_29295 overlap by 4 nucleotides AO356_29280: AO356_29280 - aldolase, at 6,809,709 to 6,810,503 _29280 AO356_29285: AO356_29285 - LysR family transcriptional regulator, at 6,810,631 to 6,811,536 _29285 AO356_29290: AO356_29290 - cysteine dioxygenase, at 6,811,777 to 6,812,385 _29290 AO356_29295: AO356_29295 - sulfurtransferase, at 6,812,382 to 6,813,965 _29295 Position (kb) 6810 6811 6812Strain fitness (log2 ratio) -1 0 1at 6810.039 kb on - strand, within AO356_29280at 6810.149 kb on + strand, within AO356_29280at 6810.215 kb on - strand, within AO356_29280at 6810.215 kb on - strand, within AO356_29280at 6810.367 kb on + strand, within AO356_29280at 6810.367 kb on + strand, within AO356_29280at 6810.367 kb on + strand, within AO356_29280at 6810.368 kb on - strand, within AO356_29280at 6810.368 kb on - strand, within AO356_29280at 6810.368 kb on - strand, within AO356_29280at 6810.527 kb on - strandat 6810.546 kb on - strandat 6810.733 kb on + strand, within AO356_29285at 6810.734 kb on - strand, within AO356_29285at 6810.978 kb on - strand, within AO356_29285at 6811.180 kb on + strand, within AO356_29285at 6811.180 kb on + strand, within AO356_29285at 6811.180 kb on + strand, within AO356_29285at 6811.226 kb on - strand, within AO356_29285at 6811.344 kb on - strand, within AO356_29285at 6811.753 kb on - strandat 6811.964 kb on - strand, within AO356_29290

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Per-strain Table

Position Strand Gene LocusTag Fraction Vanillin 1.25 mM
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6,810,039 - AO356_29280 0.42 -1.4
6,810,149 + AO356_29280 0.55 +0.1
6,810,215 - AO356_29280 0.64 +0.8
6,810,215 - AO356_29280 0.64 -1.4
6,810,367 + AO356_29280 0.83 +0.4
6,810,367 + AO356_29280 0.83 +0.8
6,810,367 + AO356_29280 0.83 -0.3
6,810,368 - AO356_29280 0.83 +0.7
6,810,368 - AO356_29280 0.83 +1.2
6,810,368 - AO356_29280 0.83 +0.6
6,810,527 - -0.9
6,810,546 - +0.4
6,810,733 + AO356_29285 0.11 +0.9
6,810,734 - AO356_29285 0.11 -0.8
6,810,978 - AO356_29285 0.38 +0.1
6,811,180 + AO356_29285 0.61 +0.4
6,811,180 + AO356_29285 0.61 +0.8
6,811,180 + AO356_29285 0.61 +0.6
6,811,226 - AO356_29285 0.66 +0.6
6,811,344 - AO356_29285 0.79 -0.5
6,811,753 - -0.1
6,811,964 - AO356_29290 0.31 +0.2

Or see this region's nucleotide sequence