Experiment: Vanillin 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_24010 and AO356_24015 overlap by 11 nucleotides AO356_24015 and AO356_24020 overlap by 14 nucleotides AO356_24020 and AO356_24025 are separated by 13 nucleotides AO356_24025 and AO356_24030 are separated by 46 nucleotides
AO356_24010: AO356_24010 - amino acid ABC transporter, at 5,383,236 to 5,383,970
_24010
AO356_24015: AO356_24015 - amino acid ABC transporter, at 5,383,960 to 5,384,748
_24015
AO356_24020: AO356_24020 - phosphate ABC transporter ATP-binding protein, at 5,384,735 to 5,385,571
_24020
AO356_24025: AO356_24025 - cysteine dioxygenase, at 5,385,585 to 5,386,184
_24025
AO356_24030: AO356_24030 - sulfurtransferase, at 5,386,231 to 5,388,996
_24030
Position (kb)
5384
5385
5386 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 5383.821 kb on + strand, within AO356_24010 at 5383.821 kb on + strand, within AO356_24010 at 5383.822 kb on - strand, within AO356_24010 at 5383.929 kb on + strand at 5384.056 kb on + strand, within AO356_24015 at 5384.056 kb on + strand, within AO356_24015 at 5384.056 kb on + strand, within AO356_24015 at 5384.056 kb on + strand, within AO356_24015 at 5384.057 kb on - strand, within AO356_24015 at 5384.057 kb on - strand, within AO356_24015 at 5384.057 kb on - strand, within AO356_24015 at 5384.282 kb on - strand, within AO356_24015 at 5384.289 kb on + strand, within AO356_24015 at 5384.289 kb on + strand, within AO356_24015 at 5384.289 kb on + strand, within AO356_24015 at 5384.290 kb on - strand, within AO356_24015 at 5384.290 kb on - strand, within AO356_24015 at 5384.293 kb on + strand, within AO356_24015 at 5384.293 kb on + strand, within AO356_24015 at 5384.293 kb on + strand, within AO356_24015 at 5384.293 kb on + strand, within AO356_24015 at 5384.293 kb on + strand, within AO356_24015 at 5384.293 kb on + strand, within AO356_24015 at 5384.293 kb on + strand, within AO356_24015 at 5384.293 kb on + strand, within AO356_24015 at 5384.293 kb on + strand, within AO356_24015 at 5384.294 kb on - strand, within AO356_24015 at 5384.294 kb on - strand, within AO356_24015 at 5384.294 kb on - strand, within AO356_24015 at 5384.294 kb on - strand, within AO356_24015 at 5384.294 kb on - strand, within AO356_24015 at 5384.329 kb on + strand, within AO356_24015 at 5384.329 kb on + strand, within AO356_24015 at 5384.330 kb on - strand, within AO356_24015 at 5384.659 kb on + strand, within AO356_24015 at 5384.659 kb on + strand, within AO356_24015 at 5384.689 kb on + strand at 5384.719 kb on + strand at 5384.735 kb on - strand at 5385.026 kb on + strand, within AO356_24020 at 5385.026 kb on + strand, within AO356_24020 at 5385.026 kb on + strand, within AO356_24020 at 5385.027 kb on - strand, within AO356_24020 at 5385.027 kb on - strand, within AO356_24020 at 5385.027 kb on - strand, within AO356_24020 at 5385.027 kb on - strand, within AO356_24020 at 5385.389 kb on + strand, within AO356_24020 at 5385.390 kb on - strand, within AO356_24020 at 5385.555 kb on - strand at 5385.816 kb on + strand, within AO356_24025 at 5385.817 kb on - strand, within AO356_24025 at 5385.832 kb on + strand, within AO356_24025 at 5385.832 kb on + strand, within AO356_24025 at 5385.909 kb on + strand, within AO356_24025 at 5385.909 kb on + strand, within AO356_24025 at 5385.909 kb on + strand, within AO356_24025 at 5385.909 kb on + strand, within AO356_24025 at 5385.909 kb on + strand, within AO356_24025 at 5385.910 kb on - strand, within AO356_24025 at 5385.910 kb on - strand, within AO356_24025 at 5385.910 kb on - strand, within AO356_24025 at 5385.910 kb on - strand, within AO356_24025 at 5385.910 kb on - strand, within AO356_24025 at 5385.948 kb on + strand, within AO356_24025 at 5385.992 kb on + strand, within AO356_24025 at 5385.993 kb on - strand, within AO356_24025 at 5386.072 kb on - strand, within AO356_24025 at 5386.072 kb on - strand, within AO356_24025 at 5386.072 kb on - strand, within AO356_24025 at 5386.104 kb on + strand, within AO356_24025 at 5386.138 kb on - strand at 5386.173 kb on + strand at 5386.174 kb on - strand at 5386.174 kb on - strand at 5386.245 kb on - strand at 5386.322 kb on - strand at 5386.362 kb on + strand at 5386.363 kb on - strand at 5386.484 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 1.25 mM remove 5,383,821 + AO356_24010 0.80 -0.4 5,383,821 + AO356_24010 0.80 -1.2 5,383,822 - AO356_24010 0.80 -0.7 5,383,929 + +0.0 5,384,056 + AO356_24015 0.12 -0.8 5,384,056 + AO356_24015 0.12 +0.4 5,384,056 + AO356_24015 0.12 +0.6 5,384,056 + AO356_24015 0.12 +0.7 5,384,057 - AO356_24015 0.12 -0.3 5,384,057 - AO356_24015 0.12 +1.4 5,384,057 - AO356_24015 0.12 -0.8 5,384,282 - AO356_24015 0.41 -1.8 5,384,289 + AO356_24015 0.42 -0.9 5,384,289 + AO356_24015 0.42 +0.3 5,384,289 + AO356_24015 0.42 +0.6 5,384,290 - AO356_24015 0.42 -0.3 5,384,290 - AO356_24015 0.42 +0.4 5,384,293 + AO356_24015 0.42 +0.3 5,384,293 + AO356_24015 0.42 +1.2 5,384,293 + AO356_24015 0.42 +1.2 5,384,293 + AO356_24015 0.42 -0.1 5,384,293 + AO356_24015 0.42 -0.6 5,384,293 + AO356_24015 0.42 +0.3 5,384,293 + AO356_24015 0.42 +0.8 5,384,293 + AO356_24015 0.42 +0.7 5,384,293 + AO356_24015 0.42 -0.1 5,384,294 - AO356_24015 0.42 -0.0 5,384,294 - AO356_24015 0.42 -0.0 5,384,294 - AO356_24015 0.42 +0.1 5,384,294 - AO356_24015 0.42 -0.2 5,384,294 - AO356_24015 0.42 +1.2 5,384,329 + AO356_24015 0.47 -0.6 5,384,329 + AO356_24015 0.47 -0.6 5,384,330 - AO356_24015 0.47 +0.7 5,384,659 + AO356_24015 0.89 +1.2 5,384,659 + AO356_24015 0.89 +0.2 5,384,689 + -0.8 5,384,719 + -0.1 5,384,735 - -0.8 5,385,026 + AO356_24020 0.35 +0.1 5,385,026 + AO356_24020 0.35 -1.7 5,385,026 + AO356_24020 0.35 +0.5 5,385,027 - AO356_24020 0.35 -0.4 5,385,027 - AO356_24020 0.35 +0.2 5,385,027 - AO356_24020 0.35 -0.4 5,385,027 - AO356_24020 0.35 -1.2 5,385,389 + AO356_24020 0.78 +0.1 5,385,390 - AO356_24020 0.78 +0.0 5,385,555 - +0.4 5,385,816 + AO356_24025 0.39 +0.6 5,385,817 - AO356_24025 0.39 +0.2 5,385,832 + AO356_24025 0.41 -0.8 5,385,832 + AO356_24025 0.41 +1.2 5,385,909 + AO356_24025 0.54 +0.5 5,385,909 + AO356_24025 0.54 +0.1 5,385,909 + AO356_24025 0.54 -2.8 5,385,909 + AO356_24025 0.54 +0.7 5,385,909 + AO356_24025 0.54 +0.4 5,385,910 - AO356_24025 0.54 -0.5 5,385,910 - AO356_24025 0.54 -0.3 5,385,910 - AO356_24025 0.54 +0.0 5,385,910 - AO356_24025 0.54 +0.9 5,385,910 - AO356_24025 0.54 -1.7 5,385,948 + AO356_24025 0.60 +1.4 5,385,992 + AO356_24025 0.68 +0.4 5,385,993 - AO356_24025 0.68 +0.6 5,386,072 - AO356_24025 0.81 -0.3 5,386,072 - AO356_24025 0.81 +0.6 5,386,072 - AO356_24025 0.81 -0.4 5,386,104 + AO356_24025 0.86 -0.2 5,386,138 - -0.9 5,386,173 + +0.7 5,386,174 - -0.8 5,386,174 - -1.6 5,386,245 - +0.2 5,386,322 - -1.2 5,386,362 + +0.6 5,386,363 - +0.7 5,386,484 - -0.3
Or see this region's nucleotide sequence