Experiment: Vanillin 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_23985 and AO356_23990 are separated by 242 nucleotides AO356_23990 and AO356_23995 are separated by 55 nucleotides AO356_23995 and AO356_24000 overlap by 4 nucleotides
AO356_23985: AO356_23985 - LysR family transcriptional regulator, at 5,377,761 to 5,378,618
_23985
AO356_23990: AO356_23990 - amino acid ABC transporter, at 5,378,861 to 5,379,703
_23990
AO356_23995: AO356_23995 - amino acid ABC transporter, at 5,379,759 to 5,380,610
_23995
AO356_24000: AO356_24000 - hydroxyacid dehydrogenase, at 5,380,607 to 5,382,031
_24000
Position (kb) 5378
5379
5380 Strain fitness (log2 ratio) -1
0
1 at 5377.923 kb on - strand, within AO356_23985 at 5377.990 kb on + strand, within AO356_23985 at 5377.991 kb on - strand, within AO356_23985 at 5378.047 kb on + strand, within AO356_23985 at 5378.047 kb on + strand, within AO356_23985 at 5378.105 kb on - strand, within AO356_23985 at 5378.884 kb on - strand at 5379.338 kb on + strand, within AO356_23990 at 5379.339 kb on - strand, within AO356_23990 at 5379.339 kb on - strand, within AO356_23990 at 5379.930 kb on - strand, within AO356_23995 at 5379.952 kb on - strand, within AO356_23995 at 5380.113 kb on + strand, within AO356_23995 at 5380.129 kb on - strand, within AO356_23995 at 5380.254 kb on + strand, within AO356_23995 at 5380.254 kb on + strand, within AO356_23995 at 5380.576 kb on - strand at 5380.576 kb on - strand at 5380.576 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 1.25 mM remove 5,377,923 - AO356_23985 0.19 +0.7 5,377,990 + AO356_23985 0.27 -1.1 5,377,991 - AO356_23985 0.27 +0.9 5,378,047 + AO356_23985 0.33 -0.0 5,378,047 + AO356_23985 0.33 -0.0 5,378,105 - AO356_23985 0.40 -0.9 5,378,884 - +0.3 5,379,338 + AO356_23990 0.57 -0.7 5,379,339 - AO356_23990 0.57 +0.2 5,379,339 - AO356_23990 0.57 -0.3 5,379,930 - AO356_23995 0.20 +0.2 5,379,952 - AO356_23995 0.23 +0.0 5,380,113 + AO356_23995 0.42 -0.8 5,380,129 - AO356_23995 0.43 -0.0 5,380,254 + AO356_23995 0.58 -0.6 5,380,254 + AO356_23995 0.58 -0.6 5,380,576 - +0.1 5,380,576 - -0.1 5,380,576 - -0.3
Or see this region's nucleotide sequence