Experiment: Vanillin 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_00230 and AO356_00235 overlap by 38 nucleotides AO356_00235 and AO356_00240 overlap by 1 nucleotides
AO356_00230: AO356_00230 - conjugal transfer protein, at 40,782 to 42,299
_00230
AO356_00235: AO356_00235 - conjugal transfer protein, at 42,262 to 42,678
_00235
AO356_00240: AO356_00240 - conjugal transfer protein, at 42,678 to 45,425
_00240
Position (kb) 42
43 Strain fitness (log2 ratio) -1
0
1 at 41.411 kb on + strand, within AO356_00230 at 41.473 kb on + strand, within AO356_00230 at 41.523 kb on - strand, within AO356_00230 at 41.544 kb on + strand, within AO356_00230 at 41.646 kb on - strand, within AO356_00230 at 41.777 kb on + strand, within AO356_00230 at 41.777 kb on + strand, within AO356_00230 at 41.778 kb on - strand, within AO356_00230 at 41.916 kb on - strand, within AO356_00230 at 41.959 kb on - strand, within AO356_00230 at 42.153 kb on + strand at 42.153 kb on + strand at 42.153 kb on + strand at 42.177 kb on + strand at 42.234 kb on + strand at 42.490 kb on + strand, within AO356_00235 at 42.498 kb on + strand, within AO356_00235 at 42.498 kb on + strand, within AO356_00235 at 42.559 kb on + strand, within AO356_00235 at 42.559 kb on + strand, within AO356_00235 at 42.559 kb on + strand, within AO356_00235 at 42.560 kb on - strand, within AO356_00235 at 42.560 kb on - strand, within AO356_00235 at 42.565 kb on + strand, within AO356_00235 at 42.565 kb on + strand, within AO356_00235 at 42.628 kb on + strand, within AO356_00235 at 42.629 kb on - strand, within AO356_00235 at 42.676 kb on + strand at 42.676 kb on + strand at 42.676 kb on + strand at 42.677 kb on - strand at 42.774 kb on + strand at 42.774 kb on + strand at 42.774 kb on + strand at 42.774 kb on + strand at 42.774 kb on + strand at 42.775 kb on - strand at 42.820 kb on - strand at 42.845 kb on - strand at 43.057 kb on - strand, within AO356_00240 at 43.058 kb on + strand, within AO356_00240 at 43.058 kb on + strand, within AO356_00240 at 43.059 kb on - strand, within AO356_00240 at 43.059 kb on - strand, within AO356_00240 at 43.354 kb on - strand, within AO356_00240 at 43.420 kb on - strand, within AO356_00240 at 43.526 kb on - strand, within AO356_00240 at 43.526 kb on - strand, within AO356_00240
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 1.25 mM remove 41,411 + AO356_00230 0.41 -0.8 41,473 + AO356_00230 0.46 -0.7 41,523 - AO356_00230 0.49 +0.1 41,544 + AO356_00230 0.50 -0.1 41,646 - AO356_00230 0.57 -1.1 41,777 + AO356_00230 0.66 -0.1 41,777 + AO356_00230 0.66 +0.1 41,778 - AO356_00230 0.66 -0.2 41,916 - AO356_00230 0.75 +0.5 41,959 - AO356_00230 0.78 +1.2 42,153 + +0.6 42,153 + +0.3 42,153 + -0.5 42,177 + +0.5 42,234 + -0.1 42,490 + AO356_00235 0.55 -0.4 42,498 + AO356_00235 0.57 -0.3 42,498 + AO356_00235 0.57 +0.8 42,559 + AO356_00235 0.71 +0.9 42,559 + AO356_00235 0.71 +0.8 42,559 + AO356_00235 0.71 +1.5 42,560 - AO356_00235 0.71 +0.2 42,560 - AO356_00235 0.71 +0.6 42,565 + AO356_00235 0.73 +0.5 42,565 + AO356_00235 0.73 +0.4 42,628 + AO356_00235 0.88 +0.7 42,629 - AO356_00235 0.88 +0.9 42,676 + +0.6 42,676 + +0.2 42,676 + +1.5 42,677 - -0.8 42,774 + +0.1 42,774 + +0.0 42,774 + +0.4 42,774 + +0.8 42,774 + +0.4 42,775 - +1.0 42,820 - -0.4 42,845 - +0.1 43,057 - AO356_00240 0.14 -1.0 43,058 + AO356_00240 0.14 -0.5 43,058 + AO356_00240 0.14 +0.5 43,059 - AO356_00240 0.14 -0.0 43,059 - AO356_00240 0.14 -0.0 43,354 - AO356_00240 0.25 -0.7 43,420 - AO356_00240 0.27 +0.6 43,526 - AO356_00240 0.31 +0.5 43,526 - AO356_00240 0.31 +0.5
Or see this region's nucleotide sequence