Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3202

Experiment: rich MoYLS4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_3201 and ruvC are separated by 268 nucleotidesruvC and DvMF_3203 are separated by 331 nucleotides DvMF_3201: DvMF_3201 - hypothetical protein (RefSeq), at 4,033,283 to 4,034,026 _3201 DvMF_3202: ruvC - Holliday junction resolvase (RefSeq), at 4,034,295 to 4,034,888 ruvC DvMF_3203: DvMF_3203 - diguanylate cyclase (RefSeq), at 4,035,220 to 4,036,929 _3203 Position (kb) 4034 4035Strain fitness (log2 ratio) -3 -2 -1 0 1at 4033.401 kb on - strand, within DvMF_3201at 4033.855 kb on + strand, within DvMF_3201at 4033.876 kb on + strand, within DvMF_3201at 4034.004 kb on - strandat 4034.484 kb on - strand, within ruvCat 4034.509 kb on - strand, within ruvCat 4034.691 kb on - strand, within ruvCat 4034.772 kb on - strand, within ruvCat 4034.921 kb on + strandat 4034.929 kb on - strandat 4034.995 kb on + strandat 4035.246 kb on + strandat 4035.246 kb on + strandat 4035.246 kb on + strandat 4035.327 kb on - strandat 4035.338 kb on + strandat 4035.501 kb on - strand, within DvMF_3203at 4035.661 kb on - strand, within DvMF_3203at 4035.671 kb on - strand, within DvMF_3203at 4035.710 kb on + strand, within DvMF_3203at 4035.869 kb on + strand, within DvMF_3203at 4035.869 kb on + strand, within DvMF_3203at 4035.875 kb on - strand, within DvMF_3203

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
remove
4,033,401 - DvMF_3201 0.16 +0.7
4,033,855 + DvMF_3201 0.77 -0.0
4,033,876 + DvMF_3201 0.80 +0.6
4,034,004 - -0.4
4,034,484 - ruvC DvMF_3202 0.32 -1.8
4,034,509 - ruvC DvMF_3202 0.36 -2.0
4,034,691 - ruvC DvMF_3202 0.67 -3.2
4,034,772 - ruvC DvMF_3202 0.80 -2.8
4,034,921 + +0.0
4,034,929 - -0.4
4,034,995 + -0.0
4,035,246 + -0.5
4,035,246 + +1.1
4,035,246 + -0.5
4,035,327 - -0.1
4,035,338 + -1.0
4,035,501 - DvMF_3203 0.16 -0.3
4,035,661 - DvMF_3203 0.26 -0.4
4,035,671 - DvMF_3203 0.26 +0.0
4,035,710 + DvMF_3203 0.29 -0.7
4,035,869 + DvMF_3203 0.38 -0.2
4,035,869 + DvMF_3203 0.38 -0.4
4,035,875 - DvMF_3203 0.38 +0.5

Or see this region's nucleotide sequence