Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1372

Experiment: rich MoYLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1370 and DvMF_1371 are separated by 495 nucleotidesDvMF_1371 and DvMF_1372 are separated by 108 nucleotidesDvMF_1372 and DvMF_1373 are separated by 687 nucleotidesDvMF_1373 and DvMF_1374 overlap by 1 nucleotides DvMF_1370: DvMF_1370 - DNA binding domain protein, excisionase family (RefSeq), at 1,678,074 to 1,678,358 _1370 DvMF_1371: DvMF_1371 - no description, at 1,678,854 to 1,678,958 _1371 DvMF_1372: DvMF_1372 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 1,679,067 to 1,681,502 _1372 DvMF_1373: DvMF_1373 - hypothetical protein (RefSeq), at 1,682,190 to 1,682,438 _1373 DvMF_1374: DvMF_1374 - putative PAS/PAC sensor protein (RefSeq), at 1,682,438 to 1,683,664 _1374 Position (kb) 1679 1680 1681 1682Strain fitness (log2 ratio) -1 0 1at 1678.097 kb on + strandat 1678.248 kb on + strand, within DvMF_1370at 1678.311 kb on + strand, within DvMF_1370at 1678.337 kb on + strandat 1678.338 kb on + strandat 1678.345 kb on - strandat 1678.396 kb on + strandat 1678.446 kb on + strandat 1678.613 kb on + strandat 1678.616 kb on - strandat 1678.790 kb on + strandat 1679.204 kb on - strandat 1679.265 kb on + strandat 1679.286 kb on - strandat 1679.325 kb on + strand, within DvMF_1372at 1679.393 kb on - strand, within DvMF_1372at 1679.637 kb on - strand, within DvMF_1372at 1680.021 kb on - strand, within DvMF_1372at 1680.052 kb on - strand, within DvMF_1372at 1680.059 kb on + strand, within DvMF_1372at 1680.108 kb on - strand, within DvMF_1372at 1680.285 kb on + strand, within DvMF_1372at 1680.406 kb on - strand, within DvMF_1372at 1680.790 kb on + strand, within DvMF_1372at 1680.816 kb on - strand, within DvMF_1372at 1680.859 kb on + strand, within DvMF_1372at 1681.079 kb on - strand, within DvMF_1372at 1681.138 kb on - strand, within DvMF_1372at 1681.196 kb on - strand, within DvMF_1372at 1681.330 kb on + strandat 1681.639 kb on - strandat 1682.015 kb on - strandat 1682.098 kb on + strandat 1682.116 kb on - strandat 1682.143 kb on + strandat 1682.164 kb on - strandat 1682.196 kb on - strandat 1682.227 kb on + strand, within DvMF_1373

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Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
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1,678,097 + -0.1
1,678,248 + DvMF_1370 0.61 -0.3
1,678,311 + DvMF_1370 0.83 -0.1
1,678,337 + -0.3
1,678,338 + -0.6
1,678,345 - +0.3
1,678,396 + -0.9
1,678,446 + -0.2
1,678,613 + +0.6
1,678,616 - -0.4
1,678,790 + -1.7
1,679,204 - -0.8
1,679,265 + -1.5
1,679,286 - +0.1
1,679,325 + DvMF_1372 0.11 -0.3
1,679,393 - DvMF_1372 0.13 -1.0
1,679,637 - DvMF_1372 0.23 -0.3
1,680,021 - DvMF_1372 0.39 +0.6
1,680,052 - DvMF_1372 0.40 -0.3
1,680,059 + DvMF_1372 0.41 -0.5
1,680,108 - DvMF_1372 0.43 +0.1
1,680,285 + DvMF_1372 0.50 -0.8
1,680,406 - DvMF_1372 0.55 -0.3
1,680,790 + DvMF_1372 0.71 +0.1
1,680,816 - DvMF_1372 0.72 -0.4
1,680,859 + DvMF_1372 0.74 -0.4
1,681,079 - DvMF_1372 0.83 -1.3
1,681,138 - DvMF_1372 0.85 -0.1
1,681,196 - DvMF_1372 0.87 -0.7
1,681,330 + -0.2
1,681,639 - -0.1
1,682,015 - -0.7
1,682,098 + -0.2
1,682,116 - -0.2
1,682,143 + +0.3
1,682,164 - -1.1
1,682,196 - -0.6
1,682,227 + DvMF_1373 0.15 +0.9

Or see this region's nucleotide sequence