Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0257

Experiment: rich MoYLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0256 and DvMF_0257 are separated by 317 nucleotidesDvMF_0257 and DvMF_R0014 are separated by 280 nucleotidesDvMF_R0014 and DvMF_0258 are separated by 66 nucleotides DvMF_0256: DvMF_0256 - AMP-dependent synthetase and ligase (RefSeq), at 291,552 to 293,303 _0256 DvMF_0257: DvMF_0257 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (RefSeq), at 293,621 to 294,940 _0257 DvMF_R0014: DvMF_R0014 - RNA component of RNaseP (RefSeq), at 295,221 to 295,528 _R0014 DvMF_0258: DvMF_0258 - protein of unknown function DUF164 (RefSeq), at 295,595 to 296,344 _0258 Position (kb) 293 294 295Strain fitness (log2 ratio) -1 0 1at 292.888 kb on - strand, within DvMF_0256at 292.902 kb on + strand, within DvMF_0256at 293.009 kb on - strand, within DvMF_0256at 293.101 kb on + strand, within DvMF_0256at 293.157 kb on + strandat 293.294 kb on - strandat 293.306 kb on - strandat 293.438 kb on - strandat 293.620 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
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292,888 - DvMF_0256 0.76 +0.6
292,902 + DvMF_0256 0.77 +0.0
293,009 - DvMF_0256 0.83 -0.2
293,101 + DvMF_0256 0.88 -0.4
293,157 + -1.0
293,294 - -0.6
293,306 - -0.1
293,438 - -0.1
293,620 + -0.9

Or see this region's nucleotide sequence