Strain Fitness in Shewanella loihica PV-4 around Shew_0942

Experiment: Vanillin 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0941 and Shew_0942 are separated by 71 nucleotidesShew_0942 and Shew_0943 are separated by 61 nucleotidesShew_0943 and Shew_0944 are separated by 56 nucleotides Shew_0941: Shew_0941 - permease YjgP/YjgQ family protein (RefSeq), at 1,082,446 to 1,083,504 _0941 Shew_0942: Shew_0942 - RDD domain-containing protein (RefSeq), at 1,083,576 to 1,084,085 _0942 Shew_0943: Shew_0943 - hypothetical protein (RefSeq), at 1,084,147 to 1,084,407 _0943 Shew_0944: Shew_0944 - GCN5-related N-acetyltransferase (RefSeq), at 1,084,464 to 1,084,976 _0944 Position (kb) 1083 1084 1085Strain fitness (log2 ratio) -2 -1 0 1at 1083.850 kb on + strand, within Shew_0942at 1083.853 kb on + strand, within Shew_0942at 1083.971 kb on + strand, within Shew_0942at 1084.547 kb on - strand, within Shew_0944at 1085.032 kb on + strandat 1085.057 kb on - strandat 1085.080 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vanillin 2 mM
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1,083,850 + Shew_0942 0.54 -2.5
1,083,853 + Shew_0942 0.54 -1.7
1,083,971 + Shew_0942 0.77 -1.8
1,084,547 - Shew_0944 0.16 +0.1
1,085,032 + +0.4
1,085,057 - +0.2
1,085,080 + -0.2

Or see this region's nucleotide sequence