Experiment: Vanillin 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0422 and Shew_0423 are separated by 77 nucleotides Shew_0423 and Shew_0424 are separated by 204 nucleotides Shew_0424 and Shew_0425 are separated by 77 nucleotides
Shew_0422: Shew_0422 - hypothetical protein (RefSeq), at 475,572 to 476,057
_0422
Shew_0423: Shew_0423 - MerR family transcriptional regulator (RefSeq), at 476,135 to 476,557
_0423
Shew_0424: Shew_0424 - amino acid carrier protein (RefSeq), at 476,762 to 478,135
_0424
Shew_0425: Shew_0425 - ABC-2 type transporter (RefSeq), at 478,213 to 479,313
_0425
Position (kb) 476
477
478
479 Strain fitness (log2 ratio) -1
0
1 at 475.766 kb on + strand, within Shew_0422 at 475.876 kb on + strand, within Shew_0422 at 475.876 kb on + strand, within Shew_0422 at 476.065 kb on + strand at 476.608 kb on + strand at 476.714 kb on - strand at 476.830 kb on + strand at 476.898 kb on + strand at 476.906 kb on - strand, within Shew_0424 at 476.916 kb on - strand, within Shew_0424 at 477.028 kb on - strand, within Shew_0424 at 477.285 kb on - strand, within Shew_0424 at 477.317 kb on + strand, within Shew_0424 at 477.924 kb on + strand, within Shew_0424 at 477.942 kb on - strand, within Shew_0424 at 477.964 kb on + strand, within Shew_0424 at 478.055 kb on - strand at 478.271 kb on - strand at 478.481 kb on + strand, within Shew_0425 at 478.699 kb on - strand, within Shew_0425 at 478.725 kb on + strand, within Shew_0425 at 478.725 kb on + strand, within Shew_0425 at 478.770 kb on + strand, within Shew_0425 at 478.805 kb on + strand, within Shew_0425 at 478.823 kb on - strand, within Shew_0425 at 478.823 kb on - strand, within Shew_0425
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 2 mM remove 475,766 + Shew_0422 0.40 -0.3 475,876 + Shew_0422 0.63 +0.1 475,876 + Shew_0422 0.63 -0.5 476,065 + +0.2 476,608 + +0.6 476,714 - -0.0 476,830 + +0.2 476,898 + -0.1 476,906 - Shew_0424 0.10 -0.1 476,916 - Shew_0424 0.11 -0.8 477,028 - Shew_0424 0.19 +0.4 477,285 - Shew_0424 0.38 -0.8 477,317 + Shew_0424 0.40 -0.3 477,924 + Shew_0424 0.85 -0.1 477,942 - Shew_0424 0.86 -0.1 477,964 + Shew_0424 0.87 -0.5 478,055 - +0.3 478,271 - -0.0 478,481 + Shew_0425 0.24 -0.1 478,699 - Shew_0425 0.44 +0.3 478,725 + Shew_0425 0.47 -0.2 478,725 + Shew_0425 0.47 -0.1 478,770 + Shew_0425 0.51 -0.0 478,805 + Shew_0425 0.54 -1.2 478,823 - Shew_0425 0.55 -0.1 478,823 - Shew_0425 0.55 +0.0
Or see this region's nucleotide sequence