Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3527

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3526 and Dshi_3527 are separated by 113 nucleotidesDshi_3527 and Dshi_3528 overlap by 4 nucleotides Dshi_3526: Dshi_3526 - deoxyxylulose-5-phosphate synthase (RefSeq), at 3,704,933 to 3,706,909 _3526 Dshi_3527: Dshi_3527 - isopentenyl-diphosphate delta-isomerase, type 1 (RefSeq), at 3,707,023 to 3,707,553 _3527 Dshi_3528: Dshi_3528 - geranylgeranyl reductase (RefSeq), at 3,707,550 to 3,708,734 _3528 Position (kb) 3707 3708Strain fitness (log2 ratio) -2 -1 0 1at 3706.148 kb on - strand, within Dshi_3526at 3706.185 kb on + strand, within Dshi_3526at 3706.190 kb on + strand, within Dshi_3526at 3706.192 kb on - strand, within Dshi_3526at 3706.195 kb on + strand, within Dshi_3526at 3706.266 kb on - strand, within Dshi_3526at 3706.414 kb on - strand, within Dshi_3526at 3706.488 kb on - strand, within Dshi_3526at 3706.508 kb on + strand, within Dshi_3526at 3706.511 kb on - strand, within Dshi_3526at 3706.571 kb on - strand, within Dshi_3526at 3706.663 kb on + strand, within Dshi_3526at 3706.896 kb on - strandat 3707.780 kb on - strand, within Dshi_3528at 3707.800 kb on + strand, within Dshi_3528at 3707.812 kb on + strand, within Dshi_3528at 3708.023 kb on + strand, within Dshi_3528at 3708.067 kb on + strand, within Dshi_3528at 3708.072 kb on + strand, within Dshi_3528at 3708.236 kb on + strand, within Dshi_3528at 3708.549 kb on - strand, within Dshi_3528at 3708.549 kb on - strand, within Dshi_3528

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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3,706,148 - Dshi_3526 0.61 +1.0
3,706,185 + Dshi_3526 0.63 -0.4
3,706,190 + Dshi_3526 0.64 +0.2
3,706,192 - Dshi_3526 0.64 +1.4
3,706,195 + Dshi_3526 0.64 +0.5
3,706,266 - Dshi_3526 0.67 -0.4
3,706,414 - Dshi_3526 0.75 -0.3
3,706,488 - Dshi_3526 0.79 -0.0
3,706,508 + Dshi_3526 0.80 -0.5
3,706,511 - Dshi_3526 0.80 +0.2
3,706,571 - Dshi_3526 0.83 +1.7
3,706,663 + Dshi_3526 0.88 +0.4
3,706,896 - -0.1
3,707,780 - Dshi_3528 0.19 +0.1
3,707,800 + Dshi_3528 0.21 -0.3
3,707,812 + Dshi_3528 0.22 -0.7
3,708,023 + Dshi_3528 0.40 +0.4
3,708,067 + Dshi_3528 0.44 +1.0
3,708,072 + Dshi_3528 0.44 -0.1
3,708,236 + Dshi_3528 0.58 -2.2
3,708,549 - Dshi_3528 0.84 -0.2
3,708,549 - Dshi_3528 0.84 -0.4

Or see this region's nucleotide sequence