Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2677

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2676 and Dshi_2677 overlap by 4 nucleotidesDshi_2677 and Dshi_2678 are separated by 22 nucleotidesDshi_2678 and Dshi_2679 overlap by 4 nucleotides Dshi_2676: Dshi_2676 - histidine kinase (RefSeq), at 2,832,817 to 2,834,847 _2676 Dshi_2677: Dshi_2677 - lipolytic protein G-D-S-L family (RefSeq), at 2,834,844 to 2,835,545 _2677 Dshi_2678: Dshi_2678 - ABC transporter related (RefSeq), at 2,835,568 to 2,836,272 _2678 Dshi_2679: Dshi_2679 - protein of unknown function DUF214 (RefSeq), at 2,836,269 to 2,838,797 _2679 Position (kb) 2834 2835 2836Strain fitness (log2 ratio) -2 -1 0 1 2at 2833.896 kb on - strand, within Dshi_2676at 2833.946 kb on + strand, within Dshi_2676at 2834.083 kb on - strand, within Dshi_2676at 2834.117 kb on - strand, within Dshi_2676at 2834.130 kb on - strand, within Dshi_2676at 2834.208 kb on - strand, within Dshi_2676at 2834.407 kb on + strand, within Dshi_2676at 2834.415 kb on - strand, within Dshi_2676at 2834.420 kb on + strand, within Dshi_2676at 2834.438 kb on - strand, within Dshi_2676at 2834.651 kb on + strandat 2834.792 kb on + strandat 2834.802 kb on + strandat 2834.952 kb on + strand, within Dshi_2677at 2834.952 kb on + strand, within Dshi_2677at 2834.967 kb on - strand, within Dshi_2677at 2834.978 kb on - strand, within Dshi_2677at 2834.981 kb on - strand, within Dshi_2677at 2835.009 kb on - strand, within Dshi_2677at 2835.043 kb on - strand, within Dshi_2677at 2835.162 kb on - strand, within Dshi_2677at 2835.173 kb on - strand, within Dshi_2677at 2835.178 kb on - strand, within Dshi_2677at 2835.256 kb on - strand, within Dshi_2677at 2835.295 kb on + strand, within Dshi_2677at 2835.305 kb on + strand, within Dshi_2677at 2835.330 kb on + strand, within Dshi_2677at 2835.334 kb on - strand, within Dshi_2677at 2835.350 kb on + strand, within Dshi_2677at 2835.437 kb on + strand, within Dshi_2677at 2835.484 kb on - strandat 2835.575 kb on + strandat 2835.615 kb on + strandat 2835.628 kb on - strandat 2835.677 kb on + strand, within Dshi_2678at 2835.695 kb on - strand, within Dshi_2678at 2835.765 kb on - strand, within Dshi_2678at 2835.776 kb on + strand, within Dshi_2678at 2835.781 kb on + strand, within Dshi_2678at 2835.847 kb on - strand, within Dshi_2678at 2835.851 kb on - strand, within Dshi_2678at 2836.296 kb on + strandat 2836.353 kb on + strandat 2836.356 kb on - strandat 2836.409 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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2,833,896 - Dshi_2676 0.53 -0.1
2,833,946 + Dshi_2676 0.56 +0.2
2,834,083 - Dshi_2676 0.62 -1.2
2,834,117 - Dshi_2676 0.64 +1.3
2,834,130 - Dshi_2676 0.65 +1.2
2,834,208 - Dshi_2676 0.68 +0.5
2,834,407 + Dshi_2676 0.78 -0.4
2,834,415 - Dshi_2676 0.79 -0.3
2,834,420 + Dshi_2676 0.79 -1.0
2,834,438 - Dshi_2676 0.80 +0.2
2,834,651 + -0.0
2,834,792 + +0.2
2,834,802 + -1.1
2,834,952 + Dshi_2677 0.15 +0.2
2,834,952 + Dshi_2677 0.15 -0.3
2,834,967 - Dshi_2677 0.18 -0.9
2,834,978 - Dshi_2677 0.19 -0.1
2,834,981 - Dshi_2677 0.20 +0.5
2,835,009 - Dshi_2677 0.24 +0.1
2,835,043 - Dshi_2677 0.28 +1.8
2,835,162 - Dshi_2677 0.45 +1.9
2,835,173 - Dshi_2677 0.47 -0.7
2,835,178 - Dshi_2677 0.48 +0.2
2,835,256 - Dshi_2677 0.59 +0.2
2,835,295 + Dshi_2677 0.64 -0.2
2,835,305 + Dshi_2677 0.66 -1.1
2,835,330 + Dshi_2677 0.69 -0.2
2,835,334 - Dshi_2677 0.70 -0.6
2,835,350 + Dshi_2677 0.72 -0.5
2,835,437 + Dshi_2677 0.84 -0.9
2,835,484 - -0.2
2,835,575 + -0.3
2,835,615 + +0.3
2,835,628 - -0.4
2,835,677 + Dshi_2678 0.15 -0.2
2,835,695 - Dshi_2678 0.18 -0.7
2,835,765 - Dshi_2678 0.28 +0.4
2,835,776 + Dshi_2678 0.30 -0.9
2,835,781 + Dshi_2678 0.30 -1.5
2,835,847 - Dshi_2678 0.40 -1.8
2,835,851 - Dshi_2678 0.40 -1.2
2,836,296 + +0.3
2,836,353 + -0.4
2,836,356 - +0.4
2,836,409 - +0.4

Or see this region's nucleotide sequence