Experiment: L-Malic Acid (C) and N2; anaerobic; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3770 and Rru_A3771 overlap by 4 nucleotides Rru_A3771 and Rru_A3772 overlap by 11 nucleotides Rru_A3772 and Rru_A3773 overlap by 4 nucleotides Rru_A3773 and Rru_A3774 are separated by 1 nucleotides
Rru_A3770: Rru_A3770 - tRNA-i(6)A37 modification enzyme MiaB (NCBI), at 4,318,290 to 4,319,693
_A3770
Rru_A3771: Rru_A3771 - PhoH-like protein (NCBI), at 4,319,690 to 4,320,658
_A3771
Rru_A3772: Rru_A3772 - Protein of unknown function UPF0054 (NCBI), at 4,320,648 to 4,321,250
_A3772
Rru_A3773: Rru_A3773 - CBS domain protein (NCBI), at 4,321,247 to 4,322,203
_A3773
Rru_A3774: Rru_A3774 - Apolipoprotein N-acyltransferase (NCBI), at 4,322,205 to 4,323,800
_A3774
Position (kb)
4320
4321
4322 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4319.723 kb on + strand at 4319.723 kb on + strand at 4319.723 kb on + strand at 4319.724 kb on - strand at 4319.888 kb on + strand, within Rru_A3771 at 4319.888 kb on + strand, within Rru_A3771 at 4319.888 kb on + strand, within Rru_A3771 at 4319.888 kb on + strand, within Rru_A3771 at 4319.888 kb on + strand, within Rru_A3771 at 4319.889 kb on - strand, within Rru_A3771 at 4319.889 kb on - strand, within Rru_A3771 at 4320.098 kb on + strand, within Rru_A3771 at 4320.098 kb on + strand, within Rru_A3771 at 4320.098 kb on + strand, within Rru_A3771 at 4320.098 kb on + strand, within Rru_A3771 at 4320.098 kb on + strand, within Rru_A3771 at 4320.098 kb on + strand, within Rru_A3771 at 4320.098 kb on + strand, within Rru_A3771 at 4320.098 kb on + strand, within Rru_A3771 at 4320.099 kb on - strand, within Rru_A3771 at 4320.099 kb on - strand, within Rru_A3771 at 4320.099 kb on - strand, within Rru_A3771 at 4320.233 kb on + strand, within Rru_A3771 at 4320.248 kb on + strand, within Rru_A3771 at 4320.248 kb on + strand, within Rru_A3771 at 4320.248 kb on + strand, within Rru_A3771 at 4320.249 kb on - strand, within Rru_A3771 at 4320.249 kb on - strand, within Rru_A3771 at 4320.249 kb on - strand, within Rru_A3771 at 4320.249 kb on - strand, within Rru_A3771 at 4320.249 kb on - strand, within Rru_A3771 at 4320.260 kb on + strand, within Rru_A3771 at 4320.261 kb on - strand, within Rru_A3771 at 4320.443 kb on - strand, within Rru_A3771 at 4320.556 kb on + strand, within Rru_A3771 at 4320.556 kb on + strand, within Rru_A3771 at 4320.608 kb on + strand at 4320.608 kb on + strand at 4320.609 kb on - strand at 4321.492 kb on + strand, within Rru_A3773 at 4321.492 kb on + strand, within Rru_A3773 at 4321.492 kb on + strand, within Rru_A3773 at 4321.802 kb on + strand, within Rru_A3773 at 4321.802 kb on + strand, within Rru_A3773
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; anaerobic; high light remove 4,319,723 + +0.0 4,319,723 + +0.3 4,319,723 + +0.3 4,319,724 - -0.9 4,319,888 + Rru_A3771 0.20 -0.5 4,319,888 + Rru_A3771 0.20 -0.4 4,319,888 + Rru_A3771 0.20 +0.9 4,319,888 + Rru_A3771 0.20 -1.1 4,319,888 + Rru_A3771 0.20 -0.8 4,319,889 - Rru_A3771 0.21 -0.2 4,319,889 - Rru_A3771 0.21 -2.6 4,320,098 + Rru_A3771 0.42 +0.3 4,320,098 + Rru_A3771 0.42 +0.7 4,320,098 + Rru_A3771 0.42 +0.9 4,320,098 + Rru_A3771 0.42 -0.0 4,320,098 + Rru_A3771 0.42 +0.9 4,320,098 + Rru_A3771 0.42 -0.4 4,320,098 + Rru_A3771 0.42 +0.1 4,320,098 + Rru_A3771 0.42 -0.3 4,320,099 - Rru_A3771 0.42 +0.6 4,320,099 - Rru_A3771 0.42 -2.8 4,320,099 - Rru_A3771 0.42 -0.8 4,320,233 + Rru_A3771 0.56 -0.0 4,320,248 + Rru_A3771 0.58 +0.9 4,320,248 + Rru_A3771 0.58 -0.2 4,320,248 + Rru_A3771 0.58 +0.1 4,320,249 - Rru_A3771 0.58 -1.6 4,320,249 - Rru_A3771 0.58 +0.5 4,320,249 - Rru_A3771 0.58 -0.1 4,320,249 - Rru_A3771 0.58 -0.4 4,320,249 - Rru_A3771 0.58 -0.4 4,320,260 + Rru_A3771 0.59 +0.1 4,320,261 - Rru_A3771 0.59 -0.6 4,320,443 - Rru_A3771 0.78 -0.6 4,320,556 + Rru_A3771 0.89 -0.9 4,320,556 + Rru_A3771 0.89 +0.7 4,320,608 + -0.1 4,320,608 + +0.9 4,320,609 - +0.2 4,321,492 + Rru_A3773 0.26 -1.6 4,321,492 + Rru_A3773 0.26 -0.1 4,321,492 + Rru_A3773 0.26 -0.6 4,321,802 + Rru_A3773 0.58 -1.6 4,321,802 + Rru_A3773 0.58 +0.9
Or see this region's nucleotide sequence