Experiment: L-Malic Acid (C) and N2; anaerobic; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3767 and Rru_A3768 are separated by 61 nucleotides Rru_A3768 and Rru_A3769 overlap by 4 nucleotides Rru_A3769 and Rru_A3770 are separated by 66 nucleotides
Rru_A3767: Rru_A3767 - Ferric uptake regulator (FUR) family (NCBI), at 4,315,983 to 4,316,405
_A3767
Rru_A3768: Rru_A3768 - hypothetical protein (NCBI), at 4,316,467 to 4,317,267
_A3768
Rru_A3769: Rru_A3769 - Phospholipid/glycerol acyltransferase (NCBI), at 4,317,264 to 4,318,223
_A3769
Rru_A3770: Rru_A3770 - tRNA-i(6)A37 modification enzyme MiaB (NCBI), at 4,318,290 to 4,319,693
_A3770
Position (kb) 4317
4318
4319 Strain fitness (log2 ratio) -2
-1
0
1 at 4318.242 kb on + strand at 4318.243 kb on - strand at 4318.312 kb on + strand at 4318.341 kb on + strand at 4318.384 kb on - strand at 4318.430 kb on + strand at 4318.430 kb on + strand at 4318.430 kb on + strand at 4318.431 kb on - strand, within Rru_A3770 at 4318.623 kb on + strand, within Rru_A3770 at 4318.803 kb on + strand, within Rru_A3770 at 4318.803 kb on + strand, within Rru_A3770 at 4318.805 kb on + strand, within Rru_A3770 at 4318.805 kb on + strand, within Rru_A3770 at 4318.806 kb on - strand, within Rru_A3770 at 4318.917 kb on + strand, within Rru_A3770 at 4318.917 kb on + strand, within Rru_A3770 at 4318.917 kb on + strand, within Rru_A3770 at 4319.007 kb on + strand, within Rru_A3770 at 4319.007 kb on + strand, within Rru_A3770 at 4319.007 kb on + strand, within Rru_A3770 at 4319.117 kb on + strand, within Rru_A3770 at 4319.117 kb on + strand, within Rru_A3770 at 4319.117 kb on + strand, within Rru_A3770
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; anaerobic; high light remove 4,318,242 + +0.1 4,318,243 - +0.9 4,318,312 + -1.4 4,318,341 + -1.3 4,318,384 - -1.1 4,318,430 + -1.2 4,318,430 + -1.1 4,318,430 + +0.9 4,318,431 - Rru_A3770 0.10 -0.6 4,318,623 + Rru_A3770 0.24 -2.2 4,318,803 + Rru_A3770 0.37 -1.6 4,318,803 + Rru_A3770 0.37 +0.4 4,318,805 + Rru_A3770 0.37 -2.2 4,318,805 + Rru_A3770 0.37 -0.2 4,318,806 - Rru_A3770 0.37 -2.2 4,318,917 + Rru_A3770 0.45 -1.6 4,318,917 + Rru_A3770 0.45 -1.5 4,318,917 + Rru_A3770 0.45 +0.9 4,319,007 + Rru_A3770 0.51 -2.1 4,319,007 + Rru_A3770 0.51 -2.4 4,319,007 + Rru_A3770 0.51 -2.6 4,319,117 + Rru_A3770 0.59 -1.5 4,319,117 + Rru_A3770 0.59 -0.8 4,319,117 + Rru_A3770 0.59 -2.5
Or see this region's nucleotide sequence