Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3432

Experiment: L-Malic Acid (C) and N2; anaerobic; high light

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A3431 and Rru_A3432 are separated by 4 nucleotidesRru_A3432 and Rru_A3433 are separated by 171 nucleotidesRru_A3433 and Rru_A3434 are separated by 169 nucleotides Rru_A3431: Rru_A3431 - Folylpolyglutamate synthetase (NCBI), at 3,948,781 to 3,950,088 _A3431 Rru_A3432: Rru_A3432 - hypothetical protein (NCBI), at 3,950,093 to 3,951,616 _A3432 Rru_A3433: Rru_A3433 - Thioredoxin (NCBI), at 3,951,788 to 3,952,102 _A3433 Rru_A3434: Rru_A3434 - UvrD/REP helicase (NCBI), at 3,952,272 to 3,955,835 _A3434 Position (kb) 3950 3951 3952Strain fitness (log2 ratio) -2 -1 0 1 2at 3950.345 kb on + strand, within Rru_A3432at 3950.345 kb on + strand, within Rru_A3432at 3950.635 kb on + strand, within Rru_A3432at 3950.635 kb on + strand, within Rru_A3432at 3950.635 kb on + strand, within Rru_A3432at 3950.727 kb on + strand, within Rru_A3432at 3950.727 kb on + strand, within Rru_A3432at 3950.727 kb on + strand, within Rru_A3432at 3950.727 kb on + strand, within Rru_A3432at 3950.727 kb on + strand, within Rru_A3432at 3950.727 kb on + strand, within Rru_A3432at 3950.728 kb on - strand, within Rru_A3432at 3951.168 kb on + strand, within Rru_A3432at 3951.168 kb on + strand, within Rru_A3432at 3951.168 kb on + strand, within Rru_A3432at 3951.168 kb on + strand, within Rru_A3432at 3951.168 kb on + strand, within Rru_A3432at 3951.168 kb on + strand, within Rru_A3432at 3951.168 kb on + strand, within Rru_A3432at 3951.169 kb on - strand, within Rru_A3432at 3951.169 kb on - strand, within Rru_A3432at 3951.169 kb on - strand, within Rru_A3432at 3951.169 kb on - strand, within Rru_A3432at 3951.315 kb on + strand, within Rru_A3432at 3951.340 kb on + strand, within Rru_A3432at 3952.120 kb on - strandat 3952.273 kb on + strandat 3952.273 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; anaerobic; high light
remove
3,950,345 + Rru_A3432 0.17 -0.1
3,950,345 + Rru_A3432 0.17 +0.2
3,950,635 + Rru_A3432 0.36 +0.9
3,950,635 + Rru_A3432 0.36 -0.5
3,950,635 + Rru_A3432 0.36 -0.4
3,950,727 + Rru_A3432 0.42 -2.0
3,950,727 + Rru_A3432 0.42 +0.9
3,950,727 + Rru_A3432 0.42 +0.3
3,950,727 + Rru_A3432 0.42 +0.6
3,950,727 + Rru_A3432 0.42 +0.0
3,950,727 + Rru_A3432 0.42 -0.0
3,950,728 - Rru_A3432 0.42 -0.6
3,951,168 + Rru_A3432 0.71 +0.1
3,951,168 + Rru_A3432 0.71 +0.7
3,951,168 + Rru_A3432 0.71 +0.6
3,951,168 + Rru_A3432 0.71 +2.0
3,951,168 + Rru_A3432 0.71 -0.4
3,951,168 + Rru_A3432 0.71 +0.5
3,951,168 + Rru_A3432 0.71 +0.3
3,951,169 - Rru_A3432 0.71 +0.0
3,951,169 - Rru_A3432 0.71 -0.5
3,951,169 - Rru_A3432 0.71 -0.7
3,951,169 - Rru_A3432 0.71 +0.9
3,951,315 + Rru_A3432 0.80 -0.3
3,951,340 + Rru_A3432 0.82 +0.3
3,952,120 - -2.0
3,952,273 + -0.5
3,952,273 + -0.9

Or see this region's nucleotide sequence