Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3098

Experiment: L-Malic Acid (C) and N2; anaerobic; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3097 and Rru_A3098 are separated by 65 nucleotidesRru_A3098 and Rru_A3099 are separated by 8 nucleotidesRru_A3099 and Rru_A3100 are separated by 50 nucleotides Rru_A3097: Rru_A3097 - hypothetical protein (NCBI), at 3,564,389 to 3,567,190 _A3097 Rru_A3098: Rru_A3098 - hypothetical protein (NCBI), at 3,567,256 to 3,567,927 _A3098 Rru_A3099: Rru_A3099 - hypothetical protein (NCBI), at 3,567,936 to 3,568,259 _A3099 Rru_A3100: Rru_A3100 - hypothetical protein (NCBI), at 3,568,310 to 3,569,191 _A3100 Position (kb) 3567 3568Strain fitness (log2 ratio) -2 -1 0 1 2at 3566.273 kb on + strand, within Rru_A3097at 3566.275 kb on + strand, within Rru_A3097at 3566.276 kb on - strand, within Rru_A3097at 3566.333 kb on + strand, within Rru_A3097at 3566.333 kb on + strand, within Rru_A3097at 3566.333 kb on + strand, within Rru_A3097at 3566.333 kb on + strand, within Rru_A3097at 3566.333 kb on + strand, within Rru_A3097at 3566.334 kb on - strand, within Rru_A3097at 3566.334 kb on - strand, within Rru_A3097at 3566.334 kb on - strand, within Rru_A3097at 3566.334 kb on - strand, within Rru_A3097at 3566.334 kb on - strand, within Rru_A3097at 3566.334 kb on - strand, within Rru_A3097at 3566.334 kb on - strand, within Rru_A3097at 3566.334 kb on - strand, within Rru_A3097at 3566.336 kb on + strand, within Rru_A3097at 3566.337 kb on - strand, within Rru_A3097at 3566.337 kb on - strand, within Rru_A3097at 3566.355 kb on - strand, within Rru_A3097at 3566.555 kb on + strand, within Rru_A3097at 3566.663 kb on + strand, within Rru_A3097at 3566.663 kb on + strand, within Rru_A3097at 3566.663 kb on + strand, within Rru_A3097at 3566.664 kb on - strand, within Rru_A3097at 3566.664 kb on - strand, within Rru_A3097at 3566.665 kb on + strand, within Rru_A3097at 3566.666 kb on - strand, within Rru_A3097at 3566.735 kb on + strand, within Rru_A3097at 3566.897 kb on + strand, within Rru_A3097at 3566.898 kb on - strand, within Rru_A3097at 3566.898 kb on - strand, within Rru_A3097at 3567.047 kb on + strandat 3567.047 kb on + strandat 3567.047 kb on + strandat 3567.047 kb on + strandat 3567.047 kb on + strandat 3567.048 kb on - strandat 3567.048 kb on - strandat 3567.213 kb on + strandat 3567.213 kb on + strandat 3567.213 kb on + strandat 3567.213 kb on + strandat 3567.214 kb on - strandat 3567.214 kb on - strandat 3567.214 kb on - strandat 3567.214 kb on - strandat 3567.241 kb on + strandat 3567.490 kb on + strand, within Rru_A3098at 3567.491 kb on - strand, within Rru_A3098at 3567.604 kb on + strand, within Rru_A3098at 3567.605 kb on - strand, within Rru_A3098at 3567.605 kb on - strand, within Rru_A3098at 3567.613 kb on + strand, within Rru_A3098at 3567.613 kb on + strand, within Rru_A3098at 3567.614 kb on - strand, within Rru_A3098at 3567.748 kb on + strand, within Rru_A3098at 3567.749 kb on - strand, within Rru_A3098at 3567.848 kb on - strand, within Rru_A3098at 3567.913 kb on + strandat 3567.913 kb on + strandat 3567.914 kb on - strandat 3567.914 kb on - strandat 3568.026 kb on + strand, within Rru_A3099at 3568.026 kb on + strand, within Rru_A3099at 3568.026 kb on + strand, within Rru_A3099at 3568.027 kb on - strand, within Rru_A3099at 3568.078 kb on + strand, within Rru_A3099at 3568.257 kb on + strandat 3568.257 kb on + strandat 3568.257 kb on + strandat 3568.257 kb on + strandat 3568.273 kb on - strandat 3568.273 kb on - strandat 3568.290 kb on + strandat 3568.291 kb on - strandat 3568.291 kb on - strandat 3568.418 kb on + strand, within Rru_A3100at 3568.419 kb on - strand, within Rru_A3100at 3568.419 kb on - strand, within Rru_A3100at 3568.575 kb on + strand, within Rru_A3100at 3568.576 kb on - strand, within Rru_A3100

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; anaerobic; high light
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3,566,273 + Rru_A3097 0.67 -0.4
3,566,275 + Rru_A3097 0.67 -0.3
3,566,276 - Rru_A3097 0.67 -0.8
3,566,333 + Rru_A3097 0.69 +1.0
3,566,333 + Rru_A3097 0.69 -0.3
3,566,333 + Rru_A3097 0.69 -0.7
3,566,333 + Rru_A3097 0.69 -0.8
3,566,333 + Rru_A3097 0.69 -0.2
3,566,334 - Rru_A3097 0.69 -0.2
3,566,334 - Rru_A3097 0.69 -0.1
3,566,334 - Rru_A3097 0.69 +0.2
3,566,334 - Rru_A3097 0.69 +0.1
3,566,334 - Rru_A3097 0.69 -0.6
3,566,334 - Rru_A3097 0.69 +0.1
3,566,334 - Rru_A3097 0.69 +1.0
3,566,334 - Rru_A3097 0.69 -0.5
3,566,336 + Rru_A3097 0.69 -0.0
3,566,337 - Rru_A3097 0.70 -0.3
3,566,337 - Rru_A3097 0.70 +0.6
3,566,355 - Rru_A3097 0.70 +0.3
3,566,555 + Rru_A3097 0.77 -0.0
3,566,663 + Rru_A3097 0.81 -0.8
3,566,663 + Rru_A3097 0.81 +1.0
3,566,663 + Rru_A3097 0.81 -0.2
3,566,664 - Rru_A3097 0.81 -0.4
3,566,664 - Rru_A3097 0.81 -0.5
3,566,665 + Rru_A3097 0.81 -0.4
3,566,666 - Rru_A3097 0.81 -0.4
3,566,735 + Rru_A3097 0.84 -1.4
3,566,897 + Rru_A3097 0.90 +1.0
3,566,898 - Rru_A3097 0.90 +0.0
3,566,898 - Rru_A3097 0.90 -0.3
3,567,047 + +1.2
3,567,047 + -0.6
3,567,047 + +0.8
3,567,047 + +0.3
3,567,047 + -0.6
3,567,048 - +0.4
3,567,048 - -0.7
3,567,213 + +0.3
3,567,213 + +0.1
3,567,213 + -0.4
3,567,213 + +0.4
3,567,214 - +1.0
3,567,214 - -0.2
3,567,214 - +0.5
3,567,214 - -1.3
3,567,241 + -0.1
3,567,490 + Rru_A3098 0.35 -0.6
3,567,491 - Rru_A3098 0.35 -0.8
3,567,604 + Rru_A3098 0.52 -1.0
3,567,605 - Rru_A3098 0.52 -0.8
3,567,605 - Rru_A3098 0.52 -2.2
3,567,613 + Rru_A3098 0.53 +1.0
3,567,613 + Rru_A3098 0.53 +0.6
3,567,614 - Rru_A3098 0.53 -0.6
3,567,748 + Rru_A3098 0.73 +0.2
3,567,749 - Rru_A3098 0.73 -0.3
3,567,848 - Rru_A3098 0.88 +1.0
3,567,913 + -0.7
3,567,913 + +0.5
3,567,914 - -0.1
3,567,914 - -0.0
3,568,026 + Rru_A3099 0.28 +0.0
3,568,026 + Rru_A3099 0.28 -0.6
3,568,026 + Rru_A3099 0.28 +1.0
3,568,027 - Rru_A3099 0.28 -0.9
3,568,078 + Rru_A3099 0.44 -0.2
3,568,257 + -0.7
3,568,257 + +2.0
3,568,257 + +1.2
3,568,257 + +0.5
3,568,273 - -1.8
3,568,273 - -0.1
3,568,290 + +0.6
3,568,291 - -0.4
3,568,291 - +0.4
3,568,418 + Rru_A3100 0.12 -1.3
3,568,419 - Rru_A3100 0.12 -0.5
3,568,419 - Rru_A3100 0.12 -0.5
3,568,575 + Rru_A3100 0.30 -1.9
3,568,576 - Rru_A3100 0.30 -1.6

Or see this region's nucleotide sequence