Experiment: L-Malic Acid (C) and N2; anaerobic; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1224 and Rru_A1225 are separated by 50 nucleotides Rru_A1225 and Rru_A1226 are separated by 28 nucleotides Rru_A1226 and Rru_A1227 are separated by 140 nucleotides Rru_A1227 and Rru_A1228 are separated by 155 nucleotides
Rru_A1224: Rru_A1224 - ATP synthase F1, alpha subunit (NCBI), at 1,445,201 to 1,446,733
_A1224
Rru_A1225: Rru_A1225 - Sodium-transporting two-sector ATPase (NCBI), at 1,446,784 to 1,447,683
_A1225
Rru_A1226: Rru_A1226 - ATP synthase F1, beta subunit (NCBI), at 1,447,712 to 1,449,136
_A1226
Rru_A1227: Rru_A1227 - H+-transporting two-sector ATPase, delta/epsilon subunit (NCBI), at 1,449,277 to 1,449,681
_A1227
Rru_A1228: Rru_A1228 - hypothetical protein (NCBI), at 1,449,837 to 1,450,646
_A1228
Position (kb)
1447
1448
1449
1450 Strain fitness (log2 ratio)
-2
-1
0
1 at 1449.815 kb on - strand at 1449.955 kb on - strand, within Rru_A1228 at 1449.963 kb on + strand, within Rru_A1228 at 1449.963 kb on + strand, within Rru_A1228 at 1449.963 kb on + strand, within Rru_A1228 at 1449.963 kb on + strand, within Rru_A1228 at 1449.963 kb on + strand, within Rru_A1228 at 1449.963 kb on + strand, within Rru_A1228 at 1449.964 kb on - strand, within Rru_A1228 at 1449.964 kb on - strand, within Rru_A1228 at 1449.964 kb on - strand, within Rru_A1228 at 1449.964 kb on - strand, within Rru_A1228 at 1450.122 kb on + strand, within Rru_A1228 at 1450.123 kb on - strand, within Rru_A1228 at 1450.124 kb on + strand, within Rru_A1228
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; anaerobic; high light remove 1,449,815 - -1.0 1,449,955 - Rru_A1228 0.15 -0.2 1,449,963 + Rru_A1228 0.16 -0.7 1,449,963 + Rru_A1228 0.16 +0.2 1,449,963 + Rru_A1228 0.16 +0.2 1,449,963 + Rru_A1228 0.16 +1.0 1,449,963 + Rru_A1228 0.16 +0.3 1,449,963 + Rru_A1228 0.16 -0.1 1,449,964 - Rru_A1228 0.16 +0.5 1,449,964 - Rru_A1228 0.16 -1.2 1,449,964 - Rru_A1228 0.16 -1.5 1,449,964 - Rru_A1228 0.16 -2.0 1,450,122 + Rru_A1228 0.35 +0.1 1,450,123 - Rru_A1228 0.35 +0.2 1,450,124 + Rru_A1228 0.35 +0.2
Or see this region's nucleotide sequence