Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1075

Experiment: L-Malic Acid (C) and N2; anaerobic; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1074 and Rru_A1075 are separated by 151 nucleotidesRru_A1075 and Rru_A1076 are separated by 110 nucleotides Rru_A1074: Rru_A1074 - MotA/TolQ/ExbB proton channel family protein (NCBI), at 1,264,641 to 1,265,969 _A1074 Rru_A1075: Rru_A1075 - hypothetical protein (NCBI), at 1,266,121 to 1,267,626 _A1075 Rru_A1076: Rru_A1076 - Inositol monophosphatase (NCBI), at 1,267,737 to 1,268,528 _A1076 Position (kb) 1266 1267 1268Strain fitness (log2 ratio) -1 0 1at 1265.203 kb on + strand, within Rru_A1074at 1265.204 kb on - strand, within Rru_A1074at 1265.708 kb on + strand, within Rru_A1074at 1266.123 kb on - strandat 1267.700 kb on - strandat 1267.700 kb on - strandat 1267.700 kb on - strandat 1267.739 kb on - strandat 1268.541 kb on - strandat 1268.541 kb on - strandat 1268.545 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; anaerobic; high light
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1,265,203 + Rru_A1074 0.42 -0.5
1,265,204 - Rru_A1074 0.42 -1.1
1,265,708 + Rru_A1074 0.80 +0.3
1,266,123 - +0.5
1,267,700 - +0.9
1,267,700 - +0.9
1,267,700 - +0.1
1,267,739 - +0.9
1,268,541 - -0.4
1,268,541 - +0.9
1,268,545 - -0.7

Or see this region's nucleotide sequence