Experiment: L-Malic Acid (C) and N2; anaerobic; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0805 and Rru_A0806 are separated by 3 nucleotides Rru_A0806 and Rru_A0807 overlap by 1 nucleotides Rru_A0807 and Rru_A0808 overlap by 4 nucleotides
Rru_A0805: Rru_A0805 - conjugal transfer protein (NCBI), at 960,586 to 961,362
_A0805
Rru_A0806: Rru_A0806 - conjugal transfer protein (NCBI), at 961,366 to 961,635
_A0806
Rru_A0807: Rru_A0807 - Conjugal transfer protein TrbC (NCBI), at 961,635 to 961,967
_A0807
Rru_A0808: Rru_A0808 - type II secretion system protein E (NCBI), at 961,964 to 962,944
_A0808
Position (kb) 961
962 Strain fitness (log2 ratio) -1
0
1 at 960.803 kb on - strand, within Rru_A0805 at 960.803 kb on - strand, within Rru_A0805 at 960.803 kb on - strand, within Rru_A0805 at 960.806 kb on + strand, within Rru_A0805 at 960.807 kb on - strand, within Rru_A0805 at 960.944 kb on + strand, within Rru_A0805 at 961.357 kb on + strand at 961.357 kb on + strand at 961.357 kb on + strand at 961.358 kb on - strand at 961.379 kb on + strand at 961.379 kb on + strand at 961.379 kb on + strand at 961.380 kb on - strand at 961.380 kb on - strand at 961.723 kb on - strand, within Rru_A0807 at 961.880 kb on - strand, within Rru_A0807 at 961.880 kb on - strand, within Rru_A0807 at 961.880 kb on - strand, within Rru_A0807 at 961.916 kb on + strand, within Rru_A0807 at 961.917 kb on - strand, within Rru_A0807 at 961.917 kb on - strand, within Rru_A0807 at 961.917 kb on - strand, within Rru_A0807 at 962.005 kb on - strand at 962.050 kb on + strand at 962.262 kb on - strand, within Rru_A0808 at 962.406 kb on - strand, within Rru_A0808 at 962.491 kb on + strand, within Rru_A0808 at 962.491 kb on + strand, within Rru_A0808 at 962.491 kb on + strand, within Rru_A0808 at 962.562 kb on + strand, within Rru_A0808 at 962.562 kb on + strand, within Rru_A0808 at 962.562 kb on + strand, within Rru_A0808 at 962.563 kb on - strand, within Rru_A0808 at 962.563 kb on - strand, within Rru_A0808 at 962.944 kb on + strand at 962.945 kb on - strand at 962.945 kb on - strand at 962.945 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; anaerobic; high light remove 960,803 - Rru_A0805 0.28 -0.1 960,803 - Rru_A0805 0.28 -0.2 960,803 - Rru_A0805 0.28 -0.9 960,806 + Rru_A0805 0.28 -0.6 960,807 - Rru_A0805 0.28 -0.1 960,944 + Rru_A0805 0.46 +0.3 961,357 + +0.6 961,357 + +0.5 961,357 + -0.5 961,358 - -0.5 961,379 + -0.6 961,379 + -0.7 961,379 + -0.2 961,380 - +0.9 961,380 - +0.2 961,723 - Rru_A0807 0.26 +0.5 961,880 - Rru_A0807 0.74 +1.3 961,880 - Rru_A0807 0.74 +0.4 961,880 - Rru_A0807 0.74 -1.4 961,916 + Rru_A0807 0.84 -0.9 961,917 - Rru_A0807 0.85 -1.3 961,917 - Rru_A0807 0.85 -0.6 961,917 - Rru_A0807 0.85 -0.3 962,005 - -0.5 962,050 + +0.2 962,262 - Rru_A0808 0.30 -1.1 962,406 - Rru_A0808 0.45 -0.4 962,491 + Rru_A0808 0.54 -0.3 962,491 + Rru_A0808 0.54 +0.7 962,491 + Rru_A0808 0.54 -0.2 962,562 + Rru_A0808 0.61 +0.3 962,562 + Rru_A0808 0.61 +0.1 962,562 + Rru_A0808 0.61 -1.3 962,563 - Rru_A0808 0.61 +0.9 962,563 - Rru_A0808 0.61 -0.9 962,944 + -0.5 962,945 - -0.4 962,945 - -0.1 962,945 - +1.4
Or see this region's nucleotide sequence