Experiment: L-Malic Acid (C) and N2; anaerobic; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0766 and Rru_A0767 are separated by 98 nucleotides Rru_A0767 and Rru_A0768 overlap by 4 nucleotides
Rru_A0766: Rru_A0766 - Adenosine deaminase (NCBI), at 903,144 to 904,148
_A0766
Rru_A0767: Rru_A0767 - ABC transporter component (NCBI), at 904,247 to 905,320
_A0767
Rru_A0768: Rru_A0768 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 905,317 to 906,993
_A0768
Position (kb) 904
905
906 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 903.290 kb on + strand, within Rru_A0766 at 903.290 kb on + strand, within Rru_A0766 at 903.290 kb on + strand, within Rru_A0766 at 903.290 kb on + strand, within Rru_A0766 at 903.290 kb on + strand, within Rru_A0766 at 903.290 kb on + strand, within Rru_A0766 at 903.290 kb on + strand, within Rru_A0766 at 903.290 kb on + strand, within Rru_A0766 at 903.291 kb on - strand, within Rru_A0766 at 903.291 kb on - strand, within Rru_A0766 at 903.291 kb on - strand, within Rru_A0766 at 903.291 kb on - strand, within Rru_A0766 at 903.292 kb on + strand, within Rru_A0766 at 903.293 kb on - strand, within Rru_A0766 at 903.305 kb on - strand, within Rru_A0766 at 903.532 kb on + strand, within Rru_A0766 at 903.533 kb on - strand, within Rru_A0766 at 903.533 kb on - strand, within Rru_A0766 at 903.641 kb on + strand, within Rru_A0766 at 903.641 kb on + strand, within Rru_A0766 at 903.641 kb on + strand, within Rru_A0766 at 903.642 kb on - strand, within Rru_A0766 at 903.726 kb on + strand, within Rru_A0766 at 903.727 kb on - strand, within Rru_A0766 at 903.834 kb on - strand, within Rru_A0766 at 903.898 kb on + strand, within Rru_A0766 at 903.898 kb on + strand, within Rru_A0766 at 903.898 kb on + strand, within Rru_A0766 at 903.899 kb on - strand, within Rru_A0766 at 903.948 kb on - strand, within Rru_A0766 at 903.959 kb on - strand, within Rru_A0766 at 903.959 kb on - strand, within Rru_A0766 at 903.994 kb on + strand, within Rru_A0766 at 903.994 kb on + strand, within Rru_A0766 at 903.994 kb on + strand, within Rru_A0766 at 903.995 kb on - strand, within Rru_A0766 at 903.995 kb on - strand, within Rru_A0766 at 904.179 kb on + strand at 904.179 kb on + strand at 904.179 kb on + strand at 904.180 kb on - strand at 904.180 kb on - strand at 904.180 kb on - strand at 904.180 kb on - strand at 904.180 kb on - strand at 904.180 kb on - strand at 904.180 kb on - strand at 904.184 kb on - strand at 904.626 kb on + strand, within Rru_A0767 at 904.626 kb on + strand, within Rru_A0767 at 904.626 kb on + strand, within Rru_A0767 at 904.627 kb on - strand, within Rru_A0767 at 905.581 kb on + strand, within Rru_A0768 at 905.758 kb on + strand, within Rru_A0768 at 905.759 kb on - strand, within Rru_A0768 at 905.868 kb on - strand, within Rru_A0768 at 906.002 kb on + strand, within Rru_A0768 at 906.003 kb on - strand, within Rru_A0768
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; anaerobic; high light remove 903,290 + Rru_A0766 0.15 -0.1 903,290 + Rru_A0766 0.15 -0.2 903,290 + Rru_A0766 0.15 -0.7 903,290 + Rru_A0766 0.15 +0.4 903,290 + Rru_A0766 0.15 +1.0 903,290 + Rru_A0766 0.15 +0.5 903,290 + Rru_A0766 0.15 -0.3 903,290 + Rru_A0766 0.15 -0.4 903,291 - Rru_A0766 0.15 +0.3 903,291 - Rru_A0766 0.15 +0.9 903,291 - Rru_A0766 0.15 -1.0 903,291 - Rru_A0766 0.15 -0.1 903,292 + Rru_A0766 0.15 +0.1 903,293 - Rru_A0766 0.15 -2.9 903,305 - Rru_A0766 0.16 -0.5 903,532 + Rru_A0766 0.39 -0.8 903,533 - Rru_A0766 0.39 -0.4 903,533 - Rru_A0766 0.39 -0.4 903,641 + Rru_A0766 0.49 -0.2 903,641 + Rru_A0766 0.49 -0.2 903,641 + Rru_A0766 0.49 -2.6 903,642 - Rru_A0766 0.50 -0.1 903,726 + Rru_A0766 0.58 -0.0 903,727 - Rru_A0766 0.58 +0.8 903,834 - Rru_A0766 0.69 +0.9 903,898 + Rru_A0766 0.75 +0.4 903,898 + Rru_A0766 0.75 +0.1 903,898 + Rru_A0766 0.75 -1.3 903,899 - Rru_A0766 0.75 -2.1 903,948 - Rru_A0766 0.80 +0.9 903,959 - Rru_A0766 0.81 +0.2 903,959 - Rru_A0766 0.81 +0.1 903,994 + Rru_A0766 0.85 -0.9 903,994 + Rru_A0766 0.85 +1.1 903,994 + Rru_A0766 0.85 -0.6 903,995 - Rru_A0766 0.85 +0.9 903,995 - Rru_A0766 0.85 -1.4 904,179 + -0.2 904,179 + +0.7 904,179 + -0.8 904,180 - +0.3 904,180 - -0.6 904,180 - -0.2 904,180 - -1.4 904,180 - -2.4 904,180 - -0.5 904,180 - -0.8 904,184 - -0.8 904,626 + Rru_A0767 0.35 -0.5 904,626 + Rru_A0767 0.35 -0.3 904,626 + Rru_A0767 0.35 +0.1 904,627 - Rru_A0767 0.35 -1.5 905,581 + Rru_A0768 0.16 -0.9 905,758 + Rru_A0768 0.26 -0.4 905,759 - Rru_A0768 0.26 +0.2 905,868 - Rru_A0768 0.33 +0.7 906,002 + Rru_A0768 0.41 -0.2 906,003 - Rru_A0768 0.41 -0.4
Or see this region's nucleotide sequence