Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0664

Experiment: L-Malic Acid (C) and N2; anaerobic; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0662 and Rru_A0663 are separated by 405 nucleotidesRru_A0663 and Rru_A0664 are separated by 232 nucleotidesRru_A0664 and Rru_A0665 are separated by 0 nucleotidesRru_A0665 and Rru_A0666 overlap by 4 nucleotides Rru_A0662: Rru_A0662 - Translation initiation factor IF-1 (NCBI), at 786,071 to 786,358 _A0662 Rru_A0663: Rru_A0663 - Cold-shock DNA-binding domain protein (NCBI), at 786,764 to 786,970 _A0663 Rru_A0664: Rru_A0664 - Signal Transduction Histidine Kinase (NCBI), at 787,203 to 788,237 _A0664 Rru_A0665: Rru_A0665 - Response regulator receiver domain protein (CheY) (NCBI), at 788,238 to 788,684 _A0665 Rru_A0666: Rru_A0666 - Multi-sensor Signal Transduction Histidine Kinase (NCBI), at 788,681 to 790,420 _A0666 Position (kb) 787 788 789Strain fitness (log2 ratio) -3 -2 -1 0 1at 786.436 kb on - strandat 786.582 kb on + strandat 786.582 kb on + strandat 786.583 kb on - strandat 786.583 kb on - strandat 786.766 kb on - strandat 786.782 kb on - strandat 786.880 kb on + strand, within Rru_A0663at 786.965 kb on - strandat 786.971 kb on + strandat 786.999 kb on + strandat 786.999 kb on + strandat 787.097 kb on + strandat 787.115 kb on + strandat 787.116 kb on - strandat 787.116 kb on - strandat 787.116 kb on - strandat 787.120 kb on - strandat 787.144 kb on + strandat 787.252 kb on + strandat 787.435 kb on + strand, within Rru_A0664at 787.435 kb on + strand, within Rru_A0664at 787.436 kb on - strand, within Rru_A0664at 787.436 kb on - strand, within Rru_A0664at 787.436 kb on - strand, within Rru_A0664at 787.436 kb on - strand, within Rru_A0664at 787.436 kb on - strand, within Rru_A0664at 787.439 kb on + strand, within Rru_A0664at 787.439 kb on + strand, within Rru_A0664at 787.440 kb on - strand, within Rru_A0664at 787.630 kb on + strand, within Rru_A0664at 787.630 kb on + strand, within Rru_A0664at 787.630 kb on + strand, within Rru_A0664at 787.630 kb on + strand, within Rru_A0664at 787.630 kb on + strand, within Rru_A0664at 787.631 kb on - strand, within Rru_A0664at 787.631 kb on - strand, within Rru_A0664at 787.631 kb on - strand, within Rru_A0664at 787.631 kb on - strand, within Rru_A0664at 787.631 kb on - strand, within Rru_A0664at 787.757 kb on + strand, within Rru_A0664at 787.757 kb on + strand, within Rru_A0664at 787.930 kb on + strand, within Rru_A0664at 787.930 kb on + strand, within Rru_A0664at 787.930 kb on + strand, within Rru_A0664at 787.930 kb on + strand, within Rru_A0664at 787.930 kb on + strand, within Rru_A0664at 787.931 kb on - strand, within Rru_A0664at 787.931 kb on - strand, within Rru_A0664at 787.931 kb on - strand, within Rru_A0664at 787.931 kb on - strand, within Rru_A0664at 787.993 kb on + strand, within Rru_A0664at 787.993 kb on + strand, within Rru_A0664at 787.993 kb on + strand, within Rru_A0664at 787.993 kb on + strand, within Rru_A0664at 787.994 kb on - strand, within Rru_A0664at 787.994 kb on - strand, within Rru_A0664at 787.994 kb on - strand, within Rru_A0664at 787.994 kb on - strand, within Rru_A0664at 787.994 kb on - strand, within Rru_A0664at 788.207 kb on + strandat 788.209 kb on + strandat 788.209 kb on + strandat 788.209 kb on + strandat 788.210 kb on - strandat 788.210 kb on - strandat 788.239 kb on + strandat 788.240 kb on - strandat 788.327 kb on + strand, within Rru_A0665at 788.330 kb on + strand, within Rru_A0665at 788.332 kb on + strand, within Rru_A0665at 788.333 kb on - strand, within Rru_A0665at 788.703 kb on + strandat 788.711 kb on + strandat 788.712 kb on - strandat 788.712 kb on - strandat 788.723 kb on + strandat 788.723 kb on + strandat 788.723 kb on + strandat 788.724 kb on - strandat 788.724 kb on - strandat 788.729 kb on + strandat 788.729 kb on + strandat 788.729 kb on + strandat 788.729 kb on + strandat 788.729 kb on + strandat 788.729 kb on + strandat 788.729 kb on + strandat 788.730 kb on - strandat 788.731 kb on + strandat 788.731 kb on + strandat 788.731 kb on + strandat 788.732 kb on - strandat 788.732 kb on - strandat 788.732 kb on - strandat 788.732 kb on - strandat 788.732 kb on - strandat 788.988 kb on + strand, within Rru_A0666at 788.988 kb on + strand, within Rru_A0666at 788.989 kb on - strand, within Rru_A0666

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; anaerobic; high light
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786,436 - -0.6
786,582 + +0.8
786,582 + +1.2
786,583 - -2.1
786,583 - -1.0
786,766 - -0.1
786,782 - -0.4
786,880 + Rru_A0663 0.56 -0.0
786,965 - -0.2
786,971 + +0.1
786,999 + +0.4
786,999 + +0.6
787,097 + -0.7
787,115 + -0.2
787,116 - +0.7
787,116 - +0.6
787,116 - +0.9
787,120 - -1.1
787,144 + +0.1
787,252 + -0.0
787,435 + Rru_A0664 0.22 +0.4
787,435 + Rru_A0664 0.22 -0.3
787,436 - Rru_A0664 0.23 +0.9
787,436 - Rru_A0664 0.23 -0.0
787,436 - Rru_A0664 0.23 +0.7
787,436 - Rru_A0664 0.23 -0.4
787,436 - Rru_A0664 0.23 -0.7
787,439 + Rru_A0664 0.23 -0.5
787,439 + Rru_A0664 0.23 -1.2
787,440 - Rru_A0664 0.23 +0.1
787,630 + Rru_A0664 0.41 -1.4
787,630 + Rru_A0664 0.41 -0.8
787,630 + Rru_A0664 0.41 +0.2
787,630 + Rru_A0664 0.41 -0.2
787,630 + Rru_A0664 0.41 -1.1
787,631 - Rru_A0664 0.41 -1.1
787,631 - Rru_A0664 0.41 -0.1
787,631 - Rru_A0664 0.41 -0.4
787,631 - Rru_A0664 0.41 -0.0
787,631 - Rru_A0664 0.41 -0.6
787,757 + Rru_A0664 0.54 -0.3
787,757 + Rru_A0664 0.54 +0.3
787,930 + Rru_A0664 0.70 +0.5
787,930 + Rru_A0664 0.70 -3.3
787,930 + Rru_A0664 0.70 +0.9
787,930 + Rru_A0664 0.70 -0.1
787,930 + Rru_A0664 0.70 -0.0
787,931 - Rru_A0664 0.70 -1.9
787,931 - Rru_A0664 0.70 -0.5
787,931 - Rru_A0664 0.70 +0.0
787,931 - Rru_A0664 0.70 -0.5
787,993 + Rru_A0664 0.76 -0.5
787,993 + Rru_A0664 0.76 -1.4
787,993 + Rru_A0664 0.76 -0.4
787,993 + Rru_A0664 0.76 -1.6
787,994 - Rru_A0664 0.76 +0.0
787,994 - Rru_A0664 0.76 +0.1
787,994 - Rru_A0664 0.76 +0.4
787,994 - Rru_A0664 0.76 -0.5
787,994 - Rru_A0664 0.76 +0.1
788,207 + +0.9
788,209 + +0.3
788,209 + +0.4
788,209 + -0.3
788,210 - -0.3
788,210 - -1.0
788,239 + +0.3
788,240 - +0.1
788,327 + Rru_A0665 0.20 +1.1
788,330 + Rru_A0665 0.21 +1.1
788,332 + Rru_A0665 0.21 +0.7
788,333 - Rru_A0665 0.21 -1.8
788,703 + -0.1
788,711 + +0.0
788,712 - -1.6
788,712 - +0.9
788,723 + +0.9
788,723 + -0.3
788,723 + -0.3
788,724 - -0.3
788,724 - +0.5
788,729 + -0.3
788,729 + -1.2
788,729 + -1.0
788,729 + -0.3
788,729 + -1.1
788,729 + +0.2
788,729 + -0.5
788,730 - +0.1
788,731 + -0.2
788,731 + +0.8
788,731 + -0.2
788,732 - -0.8
788,732 - -0.1
788,732 - -0.4
788,732 - -1.6
788,732 - -1.4
788,988 + Rru_A0666 0.18 -0.7
788,988 + Rru_A0666 0.18 +0.1
788,989 - Rru_A0666 0.18 +0.1

Or see this region's nucleotide sequence