Experiment: L-Malic Acid (C) and N2; anaerobic; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0512 and Rru_A0513 are separated by 145 nucleotides Rru_A0513 and Rru_A0514 are separated by 239 nucleotides
Rru_A0512: Rru_A0512 - hypothetical protein (NCBI), at 606,570 to 607,532
_A0512
Rru_A0513: Rru_A0513 - Protein of unknown function DUF952 (NCBI), at 607,678 to 608,043
_A0513
Rru_A0514: Rru_A0514 - Dihydroorotate dehydrogenase 2 (NCBI), at 608,283 to 609,386
_A0514
Position (kb) 607
608
609 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 606.735 kb on + strand, within Rru_A0512 at 606.735 kb on + strand, within Rru_A0512 at 606.735 kb on + strand, within Rru_A0512 at 606.735 kb on + strand, within Rru_A0512 at 606.735 kb on + strand, within Rru_A0512 at 606.736 kb on - strand, within Rru_A0512 at 606.736 kb on - strand, within Rru_A0512 at 606.736 kb on - strand, within Rru_A0512 at 606.736 kb on - strand, within Rru_A0512 at 606.759 kb on + strand, within Rru_A0512 at 606.759 kb on + strand, within Rru_A0512 at 606.759 kb on + strand, within Rru_A0512 at 606.759 kb on + strand, within Rru_A0512 at 606.760 kb on - strand, within Rru_A0512 at 606.760 kb on - strand, within Rru_A0512 at 606.760 kb on - strand, within Rru_A0512 at 606.760 kb on - strand, within Rru_A0512 at 606.760 kb on - strand, within Rru_A0512 at 606.814 kb on + strand, within Rru_A0512 at 606.815 kb on - strand, within Rru_A0512 at 606.853 kb on + strand, within Rru_A0512 at 606.854 kb on - strand, within Rru_A0512 at 607.013 kb on - strand, within Rru_A0512 at 607.013 kb on - strand, within Rru_A0512 at 607.015 kb on - strand, within Rru_A0512 at 607.033 kb on + strand, within Rru_A0512 at 607.070 kb on - strand, within Rru_A0512 at 607.070 kb on - strand, within Rru_A0512 at 607.070 kb on - strand, within Rru_A0512 at 607.070 kb on - strand, within Rru_A0512 at 607.070 kb on - strand, within Rru_A0512 at 607.091 kb on - strand, within Rru_A0512 at 607.091 kb on - strand, within Rru_A0512 at 607.262 kb on + strand, within Rru_A0512 at 607.265 kb on - strand, within Rru_A0512 at 607.293 kb on + strand, within Rru_A0512 at 607.316 kb on - strand, within Rru_A0512 at 607.406 kb on + strand, within Rru_A0512 at 607.406 kb on + strand, within Rru_A0512 at 607.495 kb on - strand at 607.509 kb on - strand at 607.509 kb on - strand at 607.509 kb on - strand at 607.556 kb on + strand at 607.556 kb on + strand at 607.556 kb on + strand at 607.557 kb on - strand at 607.561 kb on + strand at 607.561 kb on + strand at 607.561 kb on + strand at 607.562 kb on - strand at 607.583 kb on + strand at 607.666 kb on + strand at 607.667 kb on - strand at 607.667 kb on - strand at 607.667 kb on - strand at 607.667 kb on - strand at 607.667 kb on - strand at 607.667 kb on - strand at 607.696 kb on + strand at 607.697 kb on - strand at 607.942 kb on + strand, within Rru_A0513 at 607.942 kb on + strand, within Rru_A0513 at 607.942 kb on + strand, within Rru_A0513 at 607.942 kb on + strand, within Rru_A0513 at 607.943 kb on - strand, within Rru_A0513 at 607.943 kb on - strand, within Rru_A0513 at 607.943 kb on - strand, within Rru_A0513 at 607.943 kb on - strand, within Rru_A0513 at 608.041 kb on + strand at 608.094 kb on + strand at 608.095 kb on - strand at 608.095 kb on - strand at 608.105 kb on + strand at 608.105 kb on + strand at 608.105 kb on + strand at 608.106 kb on - strand at 608.106 kb on - strand at 608.106 kb on - strand at 608.168 kb on - strand at 608.213 kb on + strand at 608.295 kb on + strand at 608.736 kb on + strand, within Rru_A0514 at 608.775 kb on + strand, within Rru_A0514 at 608.775 kb on + strand, within Rru_A0514 at 608.946 kb on - strand, within Rru_A0514 at 608.946 kb on - strand, within Rru_A0514 at 608.946 kb on - strand, within Rru_A0514 at 609.005 kb on + strand, within Rru_A0514 at 609.005 kb on + strand, within Rru_A0514 at 609.006 kb on - strand, within Rru_A0514 at 609.006 kb on - strand, within Rru_A0514
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; anaerobic; high light remove 606,735 + Rru_A0512 0.17 -0.1 606,735 + Rru_A0512 0.17 +1.2 606,735 + Rru_A0512 0.17 -1.5 606,735 + Rru_A0512 0.17 -0.1 606,735 + Rru_A0512 0.17 +0.9 606,736 - Rru_A0512 0.17 +0.5 606,736 - Rru_A0512 0.17 +0.5 606,736 - Rru_A0512 0.17 +0.6 606,736 - Rru_A0512 0.17 +0.2 606,759 + Rru_A0512 0.20 +0.9 606,759 + Rru_A0512 0.20 +0.2 606,759 + Rru_A0512 0.20 +1.7 606,759 + Rru_A0512 0.20 -0.6 606,760 - Rru_A0512 0.20 -0.3 606,760 - Rru_A0512 0.20 +0.6 606,760 - Rru_A0512 0.20 -0.9 606,760 - Rru_A0512 0.20 -0.2 606,760 - Rru_A0512 0.20 +1.3 606,814 + Rru_A0512 0.25 -1.9 606,815 - Rru_A0512 0.25 +0.1 606,853 + Rru_A0512 0.29 +0.8 606,854 - Rru_A0512 0.29 +0.5 607,013 - Rru_A0512 0.46 +0.7 607,013 - Rru_A0512 0.46 +1.3 607,015 - Rru_A0512 0.46 +0.1 607,033 + Rru_A0512 0.48 -1.1 607,070 - Rru_A0512 0.52 +0.2 607,070 - Rru_A0512 0.52 +0.7 607,070 - Rru_A0512 0.52 +0.2 607,070 - Rru_A0512 0.52 -1.9 607,070 - Rru_A0512 0.52 +0.4 607,091 - Rru_A0512 0.54 -0.3 607,091 - Rru_A0512 0.54 +0.9 607,262 + Rru_A0512 0.72 -0.6 607,265 - Rru_A0512 0.72 +0.2 607,293 + Rru_A0512 0.75 -1.1 607,316 - Rru_A0512 0.77 -1.7 607,406 + Rru_A0512 0.87 -0.0 607,406 + Rru_A0512 0.87 +0.9 607,495 - -1.3 607,509 - -0.9 607,509 - +2.0 607,509 - +0.3 607,556 + +0.1 607,556 + +0.1 607,556 + +0.1 607,557 - +0.9 607,561 + +0.4 607,561 + +0.0 607,561 + -0.2 607,562 - +0.9 607,583 + -0.3 607,666 + +0.9 607,667 - -0.1 607,667 - -0.7 607,667 - -0.6 607,667 - -0.5 607,667 - +0.7 607,667 - +0.3 607,696 + -0.4 607,697 - -1.6 607,942 + Rru_A0513 0.72 -0.3 607,942 + Rru_A0513 0.72 -0.4 607,942 + Rru_A0513 0.72 -0.3 607,942 + Rru_A0513 0.72 -0.3 607,943 - Rru_A0513 0.72 -0.2 607,943 - Rru_A0513 0.72 -1.7 607,943 - Rru_A0513 0.72 -1.1 607,943 - Rru_A0513 0.72 -1.3 608,041 + -0.8 608,094 + -0.9 608,095 - -1.8 608,095 - +0.2 608,105 + -0.5 608,105 + -0.2 608,105 + -3.3 608,106 - -0.7 608,106 - -1.0 608,106 - -2.3 608,168 - -1.6 608,213 + +0.7 608,295 + +0.9 608,736 + Rru_A0514 0.41 -3.1 608,775 + Rru_A0514 0.45 -3.2 608,775 + Rru_A0514 0.45 -6.0 608,946 - Rru_A0514 0.60 -5.4 608,946 - Rru_A0514 0.60 -4.2 608,946 - Rru_A0514 0.60 -4.3 609,005 + Rru_A0514 0.65 +0.3 609,005 + Rru_A0514 0.65 -3.8 609,006 - Rru_A0514 0.65 -3.4 609,006 - Rru_A0514 0.65 -3.6
Or see this region's nucleotide sequence