Experiment: L-Malic Acid (C) and N2; anaerobic; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0369 and Rru_A0370 are separated by 5 nucleotides Rru_A0370 and Rru_A0371 overlap by 4 nucleotides Rru_A0371 and Rru_A0372 are separated by 52 nucleotides
Rru_A0369: Rru_A0369 - ATPase associated with various cellular activities, AAA_3 (NCBI), at 443,155 to 444,165
_A0369
Rru_A0370: Rru_A0370 - Protein of unknown function DUF58 (NCBI), at 444,171 to 445,109
_A0370
Rru_A0371: Rru_A0371 - Double-transmembrane region-like (NCBI), at 445,106 to 447,889
_A0371
Rru_A0372: Rru_A0372 - hypothetical protein (NCBI), at 447,942 to 450,014
_A0372
Position (kb) 445
446
447
448 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 444.435 kb on + strand, within Rru_A0370 at 444.495 kb on + strand, within Rru_A0370 at 444.496 kb on - strand, within Rru_A0370 at 444.496 kb on - strand, within Rru_A0370 at 444.496 kb on - strand, within Rru_A0370 at 445.123 kb on + strand at 445.123 kb on + strand at 445.139 kb on + strand at 445.139 kb on + strand at 445.139 kb on + strand at 445.140 kb on - strand at 445.140 kb on - strand at 445.140 kb on - strand at 445.140 kb on - strand at 445.276 kb on + strand at 445.277 kb on - strand at 445.349 kb on + strand at 445.349 kb on + strand at 445.349 kb on + strand at 445.349 kb on + strand at 445.350 kb on - strand at 445.351 kb on + strand at 445.459 kb on - strand, within Rru_A0371 at 445.459 kb on - strand, within Rru_A0371 at 446.119 kb on + strand, within Rru_A0371 at 446.119 kb on + strand, within Rru_A0371 at 446.119 kb on + strand, within Rru_A0371 at 446.119 kb on + strand, within Rru_A0371 at 446.119 kb on + strand, within Rru_A0371 at 446.119 kb on + strand, within Rru_A0371 at 446.120 kb on - strand, within Rru_A0371 at 446.195 kb on + strand, within Rru_A0371 at 446.196 kb on - strand, within Rru_A0371 at 446.196 kb on - strand, within Rru_A0371 at 446.196 kb on - strand, within Rru_A0371 at 446.891 kb on + strand, within Rru_A0371 at 446.892 kb on - strand, within Rru_A0371 at 447.254 kb on + strand, within Rru_A0371 at 447.254 kb on + strand, within Rru_A0371 at 447.254 kb on + strand, within Rru_A0371 at 447.255 kb on - strand, within Rru_A0371 at 447.255 kb on - strand, within Rru_A0371 at 447.408 kb on - strand, within Rru_A0371 at 447.408 kb on - strand, within Rru_A0371 at 447.470 kb on + strand, within Rru_A0371 at 447.470 kb on + strand, within Rru_A0371 at 447.470 kb on + strand, within Rru_A0371 at 447.470 kb on + strand, within Rru_A0371 at 447.470 kb on + strand, within Rru_A0371 at 447.471 kb on - strand, within Rru_A0371 at 447.472 kb on + strand, within Rru_A0371 at 447.472 kb on + strand, within Rru_A0371 at 447.472 kb on + strand, within Rru_A0371 at 447.472 kb on + strand, within Rru_A0371 at 447.473 kb on - strand, within Rru_A0371 at 447.473 kb on - strand, within Rru_A0371 at 447.473 kb on - strand, within Rru_A0371 at 447.473 kb on - strand, within Rru_A0371 at 447.473 kb on - strand, within Rru_A0371 at 447.599 kb on + strand, within Rru_A0371 at 447.600 kb on - strand, within Rru_A0371 at 447.600 kb on - strand, within Rru_A0371 at 447.600 kb on - strand, within Rru_A0371 at 447.600 kb on - strand, within Rru_A0371 at 447.744 kb on - strand at 447.744 kb on - strand at 447.791 kb on + strand at 447.818 kb on + strand at 447.818 kb on + strand at 447.818 kb on + strand at 447.818 kb on + strand at 447.818 kb on + strand at 447.819 kb on - strand at 447.819 kb on - strand at 447.819 kb on - strand at 447.819 kb on - strand at 447.819 kb on - strand at 447.836 kb on + strand at 447.836 kb on + strand at 447.887 kb on + strand at 447.887 kb on + strand at 447.887 kb on + strand at 447.887 kb on + strand at 447.887 kb on + strand at 447.888 kb on - strand at 447.888 kb on - strand at 447.953 kb on + strand at 447.954 kb on - strand at 447.959 kb on + strand at 448.444 kb on + strand, within Rru_A0372 at 448.444 kb on + strand, within Rru_A0372 at 448.444 kb on + strand, within Rru_A0372 at 448.444 kb on + strand, within Rru_A0372 at 448.444 kb on + strand, within Rru_A0372 at 448.444 kb on + strand, within Rru_A0372 at 448.444 kb on + strand, within Rru_A0372 at 448.444 kb on + strand, within Rru_A0372 at 448.445 kb on - strand, within Rru_A0372 at 448.445 kb on - strand, within Rru_A0372 at 448.445 kb on - strand, within Rru_A0372 at 448.854 kb on - strand, within Rru_A0372
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; anaerobic; high light remove 444,435 + Rru_A0370 0.28 -0.1 444,495 + Rru_A0370 0.35 +0.3 444,496 - Rru_A0370 0.35 +0.1 444,496 - Rru_A0370 0.35 +0.9 444,496 - Rru_A0370 0.35 +0.9 445,123 + -0.8 445,123 + -1.6 445,139 + +0.9 445,139 + -0.3 445,139 + +0.0 445,140 - -1.6 445,140 - -1.9 445,140 - -1.1 445,140 - -1.6 445,276 + -0.5 445,277 - -1.4 445,349 + +0.9 445,349 + -3.1 445,349 + -2.8 445,349 + -2.0 445,350 - -1.9 445,351 + -0.4 445,459 - Rru_A0371 0.13 -0.6 445,459 - Rru_A0371 0.13 -0.7 446,119 + Rru_A0371 0.36 -1.4 446,119 + Rru_A0371 0.36 -1.3 446,119 + Rru_A0371 0.36 +0.3 446,119 + Rru_A0371 0.36 -1.5 446,119 + Rru_A0371 0.36 -1.4 446,119 + Rru_A0371 0.36 -1.1 446,120 - Rru_A0371 0.36 -2.9 446,195 + Rru_A0371 0.39 -0.6 446,196 - Rru_A0371 0.39 -2.8 446,196 - Rru_A0371 0.39 +0.9 446,196 - Rru_A0371 0.39 -2.2 446,891 + Rru_A0371 0.64 -1.4 446,892 - Rru_A0371 0.64 -2.0 447,254 + Rru_A0371 0.77 -0.4 447,254 + Rru_A0371 0.77 +0.4 447,254 + Rru_A0371 0.77 -0.2 447,255 - Rru_A0371 0.77 -0.6 447,255 - Rru_A0371 0.77 -0.4 447,408 - Rru_A0371 0.83 +0.9 447,408 - Rru_A0371 0.83 -1.1 447,470 + Rru_A0371 0.85 -0.4 447,470 + Rru_A0371 0.85 -0.1 447,470 + Rru_A0371 0.85 +0.9 447,470 + Rru_A0371 0.85 -0.8 447,470 + Rru_A0371 0.85 -0.8 447,471 - Rru_A0371 0.85 -0.9 447,472 + Rru_A0371 0.85 +0.8 447,472 + Rru_A0371 0.85 -0.8 447,472 + Rru_A0371 0.85 -0.6 447,472 + Rru_A0371 0.85 +0.9 447,473 - Rru_A0371 0.85 -1.2 447,473 - Rru_A0371 0.85 -0.6 447,473 - Rru_A0371 0.85 +0.9 447,473 - Rru_A0371 0.85 +0.9 447,473 - Rru_A0371 0.85 -0.2 447,599 + Rru_A0371 0.90 +0.9 447,600 - Rru_A0371 0.90 -0.7 447,600 - Rru_A0371 0.90 -1.3 447,600 - Rru_A0371 0.90 -0.9 447,600 - Rru_A0371 0.90 +0.3 447,744 - -1.1 447,744 - +0.2 447,791 + +0.9 447,818 + +0.7 447,818 + +0.9 447,818 + -0.8 447,818 + +0.1 447,818 + +0.7 447,819 - -1.7 447,819 - -1.4 447,819 - -1.2 447,819 - +0.9 447,819 - -1.4 447,836 + +0.6 447,836 + -0.2 447,887 + -0.7 447,887 + -0.2 447,887 + -0.6 447,887 + -0.0 447,887 + -0.9 447,888 - -0.4 447,888 - +0.9 447,953 + -2.5 447,954 - -1.3 447,959 + +0.0 448,444 + Rru_A0372 0.24 -0.6 448,444 + Rru_A0372 0.24 +0.9 448,444 + Rru_A0372 0.24 +0.9 448,444 + Rru_A0372 0.24 -0.6 448,444 + Rru_A0372 0.24 -0.7 448,444 + Rru_A0372 0.24 -1.5 448,444 + Rru_A0372 0.24 -2.1 448,444 + Rru_A0372 0.24 -1.9 448,445 - Rru_A0372 0.24 -2.5 448,445 - Rru_A0372 0.24 -0.9 448,445 - Rru_A0372 0.24 -0.8 448,854 - Rru_A0372 0.44 -0.6
Or see this region's nucleotide sequence