Experiment: L-Malic Acid (C) and N2; anaerobic; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0182 and Rru_A0183 are separated by 155 nucleotides Rru_A0183 and Rru_A0184 overlap by 1 nucleotides
Rru_A0182: Rru_A0182 - hypothetical protein (NCBI), at 215,980 to 217,629
_A0182
Rru_A0183: Rru_A0183 - Cold-shock DNA-binding domain protein (NCBI), at 217,785 to 220,433
_A0183
Rru_A0184: Rru_A0184 - Protein of unknown function DUF324 (NCBI), at 220,433 to 222,079
_A0184
Position (kb) 217
218
219
220
221 Strain fitness (log2 ratio) -1
0
1
2 at 216.785 kb on + strand, within Rru_A0182 at 216.865 kb on + strand, within Rru_A0182 at 216.866 kb on - strand, within Rru_A0182 at 216.866 kb on - strand, within Rru_A0182 at 216.872 kb on - strand, within Rru_A0182 at 217.160 kb on - strand, within Rru_A0182 at 217.293 kb on + strand, within Rru_A0182 at 217.401 kb on - strand, within Rru_A0182 at 217.605 kb on + strand at 217.605 kb on + strand at 217.605 kb on + strand at 217.615 kb on + strand at 217.615 kb on + strand at 217.615 kb on + strand at 217.616 kb on - strand at 217.670 kb on - strand at 217.833 kb on + strand at 217.908 kb on - strand at 217.936 kb on + strand at 217.937 kb on - strand at 217.937 kb on - strand at 217.950 kb on + strand at 217.951 kb on - strand at 217.952 kb on + strand at 217.952 kb on + strand at 217.953 kb on - strand at 217.960 kb on + strand at 217.960 kb on + strand at 217.961 kb on - strand at 217.961 kb on - strand at 217.961 kb on - strand at 218.186 kb on + strand, within Rru_A0183 at 218.187 kb on - strand, within Rru_A0183 at 218.187 kb on - strand, within Rru_A0183 at 218.188 kb on + strand, within Rru_A0183 at 218.189 kb on - strand, within Rru_A0183 at 218.189 kb on - strand, within Rru_A0183 at 218.189 kb on - strand, within Rru_A0183 at 218.189 kb on - strand, within Rru_A0183 at 218.189 kb on - strand, within Rru_A0183 at 218.189 kb on - strand, within Rru_A0183 at 218.189 kb on - strand, within Rru_A0183 at 218.189 kb on - strand, within Rru_A0183 at 218.209 kb on + strand, within Rru_A0183 at 218.209 kb on + strand, within Rru_A0183 at 218.210 kb on - strand, within Rru_A0183 at 218.210 kb on - strand, within Rru_A0183 at 218.210 kb on - strand, within Rru_A0183 at 218.210 kb on - strand, within Rru_A0183 at 218.267 kb on + strand, within Rru_A0183 at 218.267 kb on + strand, within Rru_A0183 at 218.267 kb on + strand, within Rru_A0183 at 218.268 kb on - strand, within Rru_A0183 at 218.270 kb on - strand, within Rru_A0183 at 218.352 kb on - strand, within Rru_A0183 at 218.352 kb on - strand, within Rru_A0183 at 218.758 kb on + strand, within Rru_A0183 at 218.758 kb on + strand, within Rru_A0183 at 218.758 kb on + strand, within Rru_A0183 at 218.758 kb on + strand, within Rru_A0183 at 218.758 kb on + strand, within Rru_A0183 at 218.758 kb on + strand, within Rru_A0183 at 218.758 kb on + strand, within Rru_A0183 at 218.759 kb on - strand, within Rru_A0183 at 218.759 kb on - strand, within Rru_A0183 at 218.759 kb on - strand, within Rru_A0183 at 218.759 kb on - strand, within Rru_A0183 at 218.765 kb on + strand, within Rru_A0183 at 218.766 kb on - strand, within Rru_A0183 at 218.846 kb on - strand, within Rru_A0183 at 218.885 kb on + strand, within Rru_A0183 at 218.886 kb on - strand, within Rru_A0183 at 218.978 kb on + strand, within Rru_A0183 at 218.979 kb on - strand, within Rru_A0183 at 219.097 kb on + strand, within Rru_A0183 at 219.097 kb on + strand, within Rru_A0183 at 219.097 kb on + strand, within Rru_A0183 at 219.098 kb on - strand, within Rru_A0183 at 219.103 kb on + strand, within Rru_A0183 at 219.104 kb on - strand, within Rru_A0183 at 219.445 kb on - strand, within Rru_A0183 at 219.486 kb on - strand, within Rru_A0183 at 219.632 kb on + strand, within Rru_A0183 at 219.633 kb on - strand, within Rru_A0183 at 219.633 kb on - strand, within Rru_A0183 at 219.634 kb on + strand, within Rru_A0183 at 219.634 kb on + strand, within Rru_A0183 at 219.675 kb on + strand, within Rru_A0183 at 219.676 kb on - strand, within Rru_A0183 at 219.688 kb on + strand, within Rru_A0183 at 219.688 kb on + strand, within Rru_A0183 at 219.688 kb on + strand, within Rru_A0183 at 219.689 kb on - strand, within Rru_A0183 at 219.689 kb on - strand, within Rru_A0183 at 219.689 kb on - strand, within Rru_A0183 at 219.689 kb on - strand, within Rru_A0183 at 219.712 kb on + strand, within Rru_A0183 at 219.713 kb on - strand, within Rru_A0183 at 219.713 kb on - strand, within Rru_A0183 at 219.851 kb on + strand, within Rru_A0183 at 219.852 kb on - strand, within Rru_A0183 at 219.852 kb on - strand, within Rru_A0183 at 219.857 kb on + strand, within Rru_A0183 at 219.858 kb on - strand, within Rru_A0183 at 219.922 kb on - strand, within Rru_A0183 at 219.928 kb on - strand, within Rru_A0183 at 220.031 kb on + strand, within Rru_A0183 at 220.159 kb on + strand, within Rru_A0183 at 220.159 kb on + strand, within Rru_A0183 at 220.159 kb on + strand, within Rru_A0183 at 220.160 kb on - strand, within Rru_A0183 at 220.160 kb on - strand, within Rru_A0183 at 220.160 kb on - strand, within Rru_A0183 at 220.160 kb on - strand, within Rru_A0183 at 220.160 kb on - strand, within Rru_A0183 at 220.298 kb on + strand at 220.299 kb on - strand at 220.408 kb on + strand at 220.408 kb on + strand at 220.408 kb on + strand at 220.409 kb on - strand at 220.409 kb on - strand at 220.409 kb on - strand at 220.409 kb on - strand at 220.412 kb on + strand at 220.412 kb on + strand at 220.412 kb on + strand at 220.412 kb on + strand at 220.413 kb on - strand at 220.413 kb on - strand at 220.455 kb on + strand at 220.455 kb on + strand at 220.456 kb on - strand at 220.456 kb on - strand at 220.638 kb on + strand, within Rru_A0184 at 220.721 kb on + strand, within Rru_A0184 at 220.722 kb on - strand, within Rru_A0184 at 220.722 kb on - strand, within Rru_A0184 at 220.792 kb on - strand, within Rru_A0184 at 220.792 kb on - strand, within Rru_A0184 at 220.792 kb on - strand, within Rru_A0184 at 220.862 kb on - strand, within Rru_A0184 at 221.231 kb on + strand, within Rru_A0184 at 221.231 kb on + strand, within Rru_A0184 at 221.232 kb on - strand, within Rru_A0184
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; anaerobic; high light remove 216,785 + Rru_A0182 0.49 +0.6 216,865 + Rru_A0182 0.54 -0.1 216,866 - Rru_A0182 0.54 -0.3 216,866 - Rru_A0182 0.54 +0.0 216,872 - Rru_A0182 0.54 -0.7 217,160 - Rru_A0182 0.72 +0.2 217,293 + Rru_A0182 0.80 -0.6 217,401 - Rru_A0182 0.86 -0.4 217,605 + +0.5 217,605 + -0.8 217,605 + -0.5 217,615 + -1.2 217,615 + -0.2 217,615 + +0.2 217,616 - -0.6 217,670 - -0.3 217,833 + -0.1 217,908 - +0.9 217,936 + -0.7 217,937 - +2.2 217,937 - -0.1 217,950 + +0.9 217,951 - -0.1 217,952 + -0.6 217,952 + +0.2 217,953 - -0.5 217,960 + -1.4 217,960 + +0.9 217,961 - +0.2 217,961 - +0.6 217,961 - +1.7 218,186 + Rru_A0183 0.15 -0.5 218,187 - Rru_A0183 0.15 +0.6 218,187 - Rru_A0183 0.15 +0.6 218,188 + Rru_A0183 0.15 +0.1 218,189 - Rru_A0183 0.15 +0.3 218,189 - Rru_A0183 0.15 -0.8 218,189 - Rru_A0183 0.15 +0.1 218,189 - Rru_A0183 0.15 +0.2 218,189 - Rru_A0183 0.15 -0.2 218,189 - Rru_A0183 0.15 +0.0 218,189 - Rru_A0183 0.15 +0.9 218,189 - Rru_A0183 0.15 -0.1 218,209 + Rru_A0183 0.16 +0.3 218,209 + Rru_A0183 0.16 +0.2 218,210 - Rru_A0183 0.16 +0.6 218,210 - Rru_A0183 0.16 +0.2 218,210 - Rru_A0183 0.16 -0.0 218,210 - Rru_A0183 0.16 +0.1 218,267 + Rru_A0183 0.18 -0.4 218,267 + Rru_A0183 0.18 -0.6 218,267 + Rru_A0183 0.18 +1.2 218,268 - Rru_A0183 0.18 -0.2 218,270 - Rru_A0183 0.18 -0.5 218,352 - Rru_A0183 0.21 -0.3 218,352 - Rru_A0183 0.21 +0.1 218,758 + Rru_A0183 0.37 +0.6 218,758 + Rru_A0183 0.37 -0.2 218,758 + Rru_A0183 0.37 +0.9 218,758 + Rru_A0183 0.37 +0.6 218,758 + Rru_A0183 0.37 -0.7 218,758 + Rru_A0183 0.37 +0.3 218,758 + Rru_A0183 0.37 +0.7 218,759 - Rru_A0183 0.37 -0.4 218,759 - Rru_A0183 0.37 -0.5 218,759 - Rru_A0183 0.37 +0.3 218,759 - Rru_A0183 0.37 -0.2 218,765 + Rru_A0183 0.37 -0.2 218,766 - Rru_A0183 0.37 -1.0 218,846 - Rru_A0183 0.40 -0.2 218,885 + Rru_A0183 0.42 -0.2 218,886 - Rru_A0183 0.42 -0.5 218,978 + Rru_A0183 0.45 -0.5 218,979 - Rru_A0183 0.45 -0.3 219,097 + Rru_A0183 0.50 +0.1 219,097 + Rru_A0183 0.50 +0.1 219,097 + Rru_A0183 0.50 +0.7 219,098 - Rru_A0183 0.50 +0.3 219,103 + Rru_A0183 0.50 -0.2 219,104 - Rru_A0183 0.50 -0.3 219,445 - Rru_A0183 0.63 +0.9 219,486 - Rru_A0183 0.64 -0.4 219,632 + Rru_A0183 0.70 +0.9 219,633 - Rru_A0183 0.70 -0.3 219,633 - Rru_A0183 0.70 -0.5 219,634 + Rru_A0183 0.70 +0.6 219,634 + Rru_A0183 0.70 -0.3 219,675 + Rru_A0183 0.71 -0.7 219,676 - Rru_A0183 0.71 +0.4 219,688 + Rru_A0183 0.72 -0.1 219,688 + Rru_A0183 0.72 +0.7 219,688 + Rru_A0183 0.72 +0.8 219,689 - Rru_A0183 0.72 -0.2 219,689 - Rru_A0183 0.72 -0.2 219,689 - Rru_A0183 0.72 -1.0 219,689 - Rru_A0183 0.72 +0.9 219,712 + Rru_A0183 0.73 +0.0 219,713 - Rru_A0183 0.73 +0.6 219,713 - Rru_A0183 0.73 +0.1 219,851 + Rru_A0183 0.78 -0.1 219,852 - Rru_A0183 0.78 -0.4 219,852 - Rru_A0183 0.78 +0.8 219,857 + Rru_A0183 0.78 -0.8 219,858 - Rru_A0183 0.78 +0.6 219,922 - Rru_A0183 0.81 +0.1 219,928 - Rru_A0183 0.81 +0.2 220,031 + Rru_A0183 0.85 -0.8 220,159 + Rru_A0183 0.90 +0.4 220,159 + Rru_A0183 0.90 +0.0 220,159 + Rru_A0183 0.90 -0.8 220,160 - Rru_A0183 0.90 +0.5 220,160 - Rru_A0183 0.90 -0.3 220,160 - Rru_A0183 0.90 -0.1 220,160 - Rru_A0183 0.90 +0.9 220,160 - Rru_A0183 0.90 -0.2 220,298 + +0.9 220,299 - -0.9 220,408 + +0.9 220,408 + +0.5 220,408 + +0.4 220,409 - +0.4 220,409 - -0.1 220,409 - +0.1 220,409 - +0.1 220,412 + +0.9 220,412 + +0.9 220,412 + -0.0 220,412 + -0.3 220,413 - +0.9 220,413 - -0.4 220,455 + -1.0 220,455 + -0.8 220,456 - -1.0 220,456 - -0.4 220,638 + Rru_A0184 0.12 -0.3 220,721 + Rru_A0184 0.17 +0.4 220,722 - Rru_A0184 0.18 -0.3 220,722 - Rru_A0184 0.18 -0.3 220,792 - Rru_A0184 0.22 -0.3 220,792 - Rru_A0184 0.22 -0.1 220,792 - Rru_A0184 0.22 -0.1 220,862 - Rru_A0184 0.26 -0.6 221,231 + Rru_A0184 0.48 -0.0 221,231 + Rru_A0184 0.48 -0.2 221,232 - Rru_A0184 0.49 -0.3
Or see this region's nucleotide sequence