Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07070

Experiment: H2 deepwell acetate and vitamin FREE

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS07065 and MMP_RS07070 are separated by 48 nucleotidesMMP_RS07070 and MMP_RS07075 are separated by 286 nucleotides MMP_RS07065: MMP_RS07065 - translation elongation factor EF-1 subunit alpha, at 1,351,135 to 1,352,421 _RS07065 MMP_RS07070: MMP_RS07070 - 30S ribosomal protein S10, at 1,352,470 to 1,352,778 _RS07070 MMP_RS07075: MMP_RS07075 - phosphomannomutase/phosphoglucomutase, at 1,353,065 to 1,354,378 _RS07075 Position (kb) 1352 1353Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1351.815 kb on + strandat 1352.467 kb on + strandat 1352.564 kb on - strandat 1352.889 kb on + strandat 1352.965 kb on + strandat 1352.970 kb on + strandat 1352.974 kb on - strandat 1353.012 kb on - strandat 1353.016 kb on - strandat 1353.016 kb on - strandat 1353.017 kb on + strandat 1353.019 kb on - strandat 1353.021 kb on - strandat 1353.061 kb on - strandat 1353.081 kb on + strandat 1353.221 kb on + strand, within MMP_RS07075at 1353.580 kb on - strand, within MMP_RS07075at 1353.603 kb on - strand, within MMP_RS07075at 1353.707 kb on + strand, within MMP_RS07075

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 deepwell acetate and vitamin FREE
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1,351,815 + -2.2
1,352,467 + -0.3
1,352,564 - -1.1
1,352,889 + +1.6
1,352,965 + +1.7
1,352,970 + -0.2
1,352,974 - +1.6
1,353,012 - -0.6
1,353,016 - -1.9
1,353,016 - -1.6
1,353,017 + +1.3
1,353,019 - -2.4
1,353,021 - -0.0
1,353,061 - -4.8
1,353,081 + -1.6
1,353,221 + MMP_RS07075 0.12 -3.9
1,353,580 - MMP_RS07075 0.39 -0.3
1,353,603 - MMP_RS07075 0.41 -1.1
1,353,707 + MMP_RS07075 0.49 -2.7

Or see this region's nucleotide sequence