Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04505

Experiment: H2 deepwell acetate and vitamin FREE

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04500 and MMP_RS04505 are separated by 170 nucleotidesMMP_RS04505 and MMP_RS04510 are separated by 15 nucleotidesMMP_RS04510 and MMP_RS04515 are separated by 13 nucleotides MMP_RS04500: MMP_RS04500 - adenosylmethionine--8-amino-7-oxononanoate transaminase, at 856,222 to 857,625 _RS04500 MMP_RS04505: MMP_RS04505 - glycine betaine ABC transporter substrate-binding protein, at 857,796 to 858,683 _RS04505 MMP_RS04510: MMP_RS04510 - ABC transporter permease subunit, at 858,699 to 859,532 _RS04510 MMP_RS04515: MMP_RS04515 - betaine/proline/choline family ABC transporter ATP-binding protein, at 859,546 to 860,715 _RS04515 Position (kb) 857 858 859Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 856.840 kb on - strand, within MMP_RS04500at 856.841 kb on + strand, within MMP_RS04500at 856.842 kb on - strand, within MMP_RS04500at 856.843 kb on + strand, within MMP_RS04500at 856.843 kb on + strand, within MMP_RS04500at 856.843 kb on + strand, within MMP_RS04500at 856.843 kb on + strand, within MMP_RS04500at 856.843 kb on + strand, within MMP_RS04500at 856.845 kb on - strand, within MMP_RS04500at 856.845 kb on - strand, within MMP_RS04500at 856.905 kb on - strand, within MMP_RS04500at 856.906 kb on + strand, within MMP_RS04500at 856.933 kb on - strand, within MMP_RS04500at 856.933 kb on - strand, within MMP_RS04500at 856.949 kb on + strand, within MMP_RS04500at 856.963 kb on + strand, within MMP_RS04500at 857.048 kb on - strand, within MMP_RS04500at 857.066 kb on - strand, within MMP_RS04500at 857.199 kb on - strand, within MMP_RS04500at 857.200 kb on + strand, within MMP_RS04500at 857.226 kb on + strand, within MMP_RS04500at 857.329 kb on - strand, within MMP_RS04500at 857.383 kb on - strand, within MMP_RS04500at 857.466 kb on - strand, within MMP_RS04500at 857.519 kb on + strandat 857.540 kb on - strandat 857.541 kb on + strandat 857.556 kb on - strandat 857.665 kb on - strandat 857.680 kb on - strandat 857.680 kb on - strandat 857.709 kb on - strandat 857.712 kb on + strandat 857.712 kb on + strandat 857.798 kb on + strandat 857.823 kb on - strandat 857.890 kb on - strand, within MMP_RS04505at 857.890 kb on - strand, within MMP_RS04505at 857.897 kb on + strand, within MMP_RS04505at 857.951 kb on + strand, within MMP_RS04505at 857.953 kb on + strand, within MMP_RS04505at 857.996 kb on + strand, within MMP_RS04505at 857.997 kb on - strand, within MMP_RS04505at 857.997 kb on - strand, within MMP_RS04505at 857.997 kb on - strand, within MMP_RS04505at 858.018 kb on - strand, within MMP_RS04505at 858.019 kb on + strand, within MMP_RS04505at 858.090 kb on - strand, within MMP_RS04505at 858.091 kb on + strand, within MMP_RS04505at 858.091 kb on + strand, within MMP_RS04505at 858.147 kb on + strand, within MMP_RS04505at 858.213 kb on + strand, within MMP_RS04505at 858.291 kb on - strand, within MMP_RS04505at 858.304 kb on - strand, within MMP_RS04505at 858.304 kb on - strand, within MMP_RS04505at 858.304 kb on - strand, within MMP_RS04505at 858.304 kb on - strand, within MMP_RS04505at 858.304 kb on - strand, within MMP_RS04505at 858.304 kb on - strand, within MMP_RS04505at 858.308 kb on - strand, within MMP_RS04505at 858.308 kb on - strand, within MMP_RS04505at 858.308 kb on - strand, within MMP_RS04505at 858.308 kb on - strand, within MMP_RS04505at 858.308 kb on - strand, within MMP_RS04505at 858.308 kb on - strand, within MMP_RS04505at 858.308 kb on - strand, within MMP_RS04505at 858.309 kb on + strand, within MMP_RS04505at 858.309 kb on + strand, within MMP_RS04505at 858.309 kb on + strand, within MMP_RS04505at 858.309 kb on + strand, within MMP_RS04505at 858.310 kb on - strand, within MMP_RS04505at 858.311 kb on + strand, within MMP_RS04505at 858.314 kb on - strand, within MMP_RS04505at 858.351 kb on - strand, within MMP_RS04505at 858.351 kb on - strand, within MMP_RS04505at 858.352 kb on + strand, within MMP_RS04505at 858.352 kb on + strand, within MMP_RS04505at 858.429 kb on - strand, within MMP_RS04505at 858.464 kb on - strand, within MMP_RS04505at 858.464 kb on - strand, within MMP_RS04505at 858.540 kb on + strand, within MMP_RS04505at 858.546 kb on + strand, within MMP_RS04505at 858.546 kb on + strand, within MMP_RS04505at 858.697 kb on - strandat 858.759 kb on + strandat 858.794 kb on - strand, within MMP_RS04510at 858.795 kb on + strand, within MMP_RS04510at 858.816 kb on - strand, within MMP_RS04510at 858.946 kb on + strand, within MMP_RS04510at 859.115 kb on + strand, within MMP_RS04510at 859.115 kb on + strand, within MMP_RS04510at 859.141 kb on + strand, within MMP_RS04510at 859.170 kb on - strand, within MMP_RS04510at 859.171 kb on + strand, within MMP_RS04510at 859.191 kb on - strand, within MMP_RS04510at 859.292 kb on - strand, within MMP_RS04510at 859.295 kb on - strand, within MMP_RS04510at 859.353 kb on - strand, within MMP_RS04510at 859.354 kb on + strand, within MMP_RS04510at 859.386 kb on - strand, within MMP_RS04510at 859.431 kb on - strand, within MMP_RS04510at 859.431 kb on - strand, within MMP_RS04510at 859.431 kb on - strand, within MMP_RS04510at 859.432 kb on + strand, within MMP_RS04510at 859.435 kb on - strand, within MMP_RS04510at 859.436 kb on + strand, within MMP_RS04510at 859.467 kb on + strandat 859.467 kb on + strandat 859.517 kb on - strandat 859.548 kb on + strandat 859.548 kb on + strandat 859.557 kb on - strandat 859.563 kb on - strandat 859.587 kb on + strandat 859.613 kb on + strandat 859.673 kb on + strand, within MMP_RS04515

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 deepwell acetate and vitamin FREE
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856,840 - MMP_RS04500 0.44 -4.3
856,841 + MMP_RS04500 0.44 -2.2
856,842 - MMP_RS04500 0.44 -5.2
856,843 + MMP_RS04500 0.44 -5.7
856,843 + MMP_RS04500 0.44 -5.0
856,843 + MMP_RS04500 0.44 -7.1
856,843 + MMP_RS04500 0.44 -4.9
856,843 + MMP_RS04500 0.44 -3.1
856,845 - MMP_RS04500 0.44 -5.8
856,845 - MMP_RS04500 0.44 -4.0
856,905 - MMP_RS04500 0.49 -4.1
856,906 + MMP_RS04500 0.49 -4.9
856,933 - MMP_RS04500 0.51 -6.0
856,933 - MMP_RS04500 0.51 -4.1
856,949 + MMP_RS04500 0.52 -5.1
856,963 + MMP_RS04500 0.53 -6.1
857,048 - MMP_RS04500 0.59 -4.6
857,066 - MMP_RS04500 0.60 -4.1
857,199 - MMP_RS04500 0.70 -5.3
857,200 + MMP_RS04500 0.70 -6.7
857,226 + MMP_RS04500 0.72 -4.3
857,329 - MMP_RS04500 0.79 -4.5
857,383 - MMP_RS04500 0.83 -3.9
857,466 - MMP_RS04500 0.89 -4.7
857,519 + -6.3
857,540 - -5.9
857,541 + -5.4
857,556 - -5.0
857,665 - -1.0
857,680 - -0.1
857,680 - -0.1
857,709 - +0.2
857,712 + -1.1
857,712 + -0.2
857,798 + -0.6
857,823 - -0.1
857,890 - MMP_RS04505 0.11 +0.1
857,890 - MMP_RS04505 0.11 -0.8
857,897 + MMP_RS04505 0.11 -1.7
857,951 + MMP_RS04505 0.17 -0.3
857,953 + MMP_RS04505 0.18 +0.8
857,996 + MMP_RS04505 0.23 +0.3
857,997 - MMP_RS04505 0.23 -0.9
857,997 - MMP_RS04505 0.23 -0.4
857,997 - MMP_RS04505 0.23 +0.4
858,018 - MMP_RS04505 0.25 +0.7
858,019 + MMP_RS04505 0.25 -0.4
858,090 - MMP_RS04505 0.33 +1.2
858,091 + MMP_RS04505 0.33 +1.0
858,091 + MMP_RS04505 0.33 -0.7
858,147 + MMP_RS04505 0.40 -1.3
858,213 + MMP_RS04505 0.47 -0.2
858,291 - MMP_RS04505 0.56 +1.1
858,304 - MMP_RS04505 0.57 +1.0
858,304 - MMP_RS04505 0.57 -0.1
858,304 - MMP_RS04505 0.57 +0.8
858,304 - MMP_RS04505 0.57 +0.5
858,304 - MMP_RS04505 0.57 +1.2
858,304 - MMP_RS04505 0.57 -1.3
858,308 - MMP_RS04505 0.58 +1.7
858,308 - MMP_RS04505 0.58 +0.6
858,308 - MMP_RS04505 0.58 -0.3
858,308 - MMP_RS04505 0.58 -0.6
858,308 - MMP_RS04505 0.58 -1.0
858,308 - MMP_RS04505 0.58 -1.1
858,308 - MMP_RS04505 0.58 +1.6
858,309 + MMP_RS04505 0.58 -0.1
858,309 + MMP_RS04505 0.58 -0.6
858,309 + MMP_RS04505 0.58 -0.2
858,309 + MMP_RS04505 0.58 -0.9
858,310 - MMP_RS04505 0.58 +1.0
858,311 + MMP_RS04505 0.58 -0.0
858,314 - MMP_RS04505 0.58 -0.6
858,351 - MMP_RS04505 0.62 +1.0
858,351 - MMP_RS04505 0.62 +0.4
858,352 + MMP_RS04505 0.63 -0.0
858,352 + MMP_RS04505 0.63 +1.3
858,429 - MMP_RS04505 0.71 -0.3
858,464 - MMP_RS04505 0.75 -1.1
858,464 - MMP_RS04505 0.75 +0.4
858,540 + MMP_RS04505 0.84 +0.9
858,546 + MMP_RS04505 0.84 +0.0
858,546 + MMP_RS04505 0.84 -3.1
858,697 - +1.7
858,759 + -1.6
858,794 - MMP_RS04510 0.11 -1.6
858,795 + MMP_RS04510 0.12 +0.2
858,816 - MMP_RS04510 0.14 +0.2
858,946 + MMP_RS04510 0.30 +0.3
859,115 + MMP_RS04510 0.50 -0.5
859,115 + MMP_RS04510 0.50 -2.3
859,141 + MMP_RS04510 0.53 -0.7
859,170 - MMP_RS04510 0.56 -2.8
859,171 + MMP_RS04510 0.57 -2.5
859,191 - MMP_RS04510 0.59 +0.2
859,292 - MMP_RS04510 0.71 +0.6
859,295 - MMP_RS04510 0.71 +0.0
859,353 - MMP_RS04510 0.78 -0.8
859,354 + MMP_RS04510 0.79 -1.7
859,386 - MMP_RS04510 0.82 -0.3
859,431 - MMP_RS04510 0.88 +1.3
859,431 - MMP_RS04510 0.88 -0.2
859,431 - MMP_RS04510 0.88 +0.1
859,432 + MMP_RS04510 0.88 +1.3
859,435 - MMP_RS04510 0.88 +0.0
859,436 + MMP_RS04510 0.88 -0.9
859,467 + -0.6
859,467 + -0.1
859,517 - +0.1
859,548 + +1.4
859,548 + +0.9
859,557 - -0.8
859,563 - +1.6
859,587 + +0.6
859,613 + -0.9
859,673 + MMP_RS04515 0.11 -0.9

Or see this region's nucleotide sequence