Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS07800

Experiment: control, 1x iron with casaminos and vitamins, formate media

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	control, 1x iron with casaminos and vitamins, formate media
1,427,217	+		MMJJ_RS07790	0.69	-0.1
1,427,222	-		MMJJ_RS07790	0.70	+0.8
1,427,245	-		MMJJ_RS07790	0.75	+0.8
1,427,245	-		MMJJ_RS07790	0.75	-0.1
1,427,259	-		MMJJ_RS07790	0.79	-0.1
1,427,260	+		MMJJ_RS07790	0.79	-0.5
1,427,260	+		MMJJ_RS07790	0.79	+0.4
1,427,260	+		MMJJ_RS07790	0.79	-1.1
1,427,269	-		MMJJ_RS07790	0.81	-0.4
1,427,269	-		MMJJ_RS07790	0.81	-0.4
1,427,269	-		MMJJ_RS07790	0.81	-0.2
1,427,269	-		MMJJ_RS07790	0.81	-0.2
1,427,269	-		MMJJ_RS07790	0.81	-0.2
1,427,269	-		MMJJ_RS07790	0.81	-0.3
1,427,270	+		MMJJ_RS07790	0.81	-0.9
1,427,270	+		MMJJ_RS07790	0.81	+0.7
1,427,270	+		MMJJ_RS07790	0.81	-0.8
1,427,299	+		MMJJ_RS07790	0.87	-0.6
1,427,304	-		MMJJ_RS07790	0.89	+0.2
1,427,305	+		MMJJ_RS07790	0.89	-0.8
1,427,344	+				-0.0
1,427,350	-				+0.4
1,427,376	+				+0.3
1,427,380	-				+0.9
1,427,381	+				+0.3
1,427,381	+				+0.2
1,427,384	-				+0.2
1,427,385	+				-0.2
1,427,385	+				-0.6
1,427,385	+				-0.5
1,427,386	-				-1.7
1,427,386	-				-0.2
1,427,406	-				+0.1
1,427,406	-				+0.5
1,427,407	+				+0.0
1,427,411	-				+0.4
1,427,411	-				-0.4
1,427,411	-				-0.8
1,427,411	-				+0.0
1,427,420	+				+0.6
1,427,429	-				-0.1
1,427,455	-				-1.1
1,427,457	-				-0.6
1,427,458	+				+0.5
1,427,458	+				-0.7
1,427,468	-				-0.8
1,427,471	+				+0.0
1,427,471	+				+0.6
1,427,484	-				+0.6
1,427,485	+				+0.5
1,427,486	-				-0.5
1,427,486	-				+0.3
1,427,486	-				-1.0
1,427,487	+				-0.9
1,427,487	+				+0.3
1,427,487	+				+0.0
1,427,487	+				-0.6
1,427,488	-				-0.8
1,427,488	-				-0.1
1,427,488	-				+0.9
1,427,488	-				-0.3
1,427,488	-				+0.7
1,427,488	-				-1.1
1,427,488	-				+0.4
1,427,489	+				-0.4
1,427,489	+				-0.5
1,427,499	-				-0.5
1,427,499	-				+0.7
1,427,503	-				+1.0
1,427,503	-				-0.6
1,427,503	-				+0.9
1,427,503	-				-0.0
1,427,503	-				-0.1
1,427,504	+				+1.5
1,427,507	-				-0.2
1,427,508	+				-2.0
1,427,508	+				-0.6
1,427,522	-				+0.3
1,427,523	+				+0.2
1,427,523	+				+1.2
1,427,524	-				-0.5
1,427,536	-				+1.4
1,427,536	-				+0.7
1,427,536	-				+0.2
1,427,536	-				+0.2
1,427,536	-				+0.2
1,427,536	-				+0.4
1,427,537	+				+1.8
1,427,537	+				-0.0
1,427,537	+				+0.3
1,427,537	+				-0.4
1,427,537	+				-0.5
1,427,537	+				+0.2
1,427,537	+				+0.2
1,427,540	+				+0.5
1,427,540	+				+0.4
1,427,540	+				-0.8
1,427,540	+				+0.2
1,427,575	-				-0.2
1,427,582	-				-1.0
1,427,582	-				-0.3
1,427,582	-				+0.3
1,427,597	-				-0.1
1,427,602	-				+0.2
1,427,603	+				-1.6
1,427,616	+				-0.0
1,427,704	-		MMJJ_RS07795	0.16	-0.8
1,427,724	-		MMJJ_RS07795	0.19	+0.4
1,427,840	-		MMJJ_RS07795	0.40	-0.4
1,427,847	+		MMJJ_RS07795	0.42	+0.1
1,427,895	-		MMJJ_RS07795	0.50	+0.9
1,427,953	-		MMJJ_RS07795	0.61	+0.3
1,427,953	-		MMJJ_RS07795	0.61	-0.1
1,428,021	-		MMJJ_RS07795	0.73	-0.7
1,428,022	+		MMJJ_RS07795	0.73	+0.3
1,428,023	-		MMJJ_RS07795	0.73	+0.4
1,428,024	+		MMJJ_RS07795	0.74	-0.0
1,428,024	+		MMJJ_RS07795	0.74	-0.3
1,428,038	-		MMJJ_RS07795	0.76	+0.0
1,428,038	-		MMJJ_RS07795	0.76	-0.0
1,428,041	+		MMJJ_RS07795	0.77	+2.6
1,428,048	-		MMJJ_RS07795	0.78	+0.4
1,428,048	-		MMJJ_RS07795	0.78	+0.6
1,428,090	+		MMJJ_RS07795	0.85	+0.6
1,428,161	-				+0.2
1,428,161	-				-0.7
1,428,162	+				-0.6
1,428,164	+				+0.4
1,428,227	-				+0.4
1,428,227	-				-0.5
1,428,227	-				+0.5
1,428,227	-				-0.0
1,428,227	-				-0.0
1,428,228	+				+0.6
1,428,228	+				+0.9
1,428,228	+				+0.2
1,428,228	+				-0.1
1,428,234	-				-1.1
1,428,266	+				+0.3
1,428,293	-				+0.2
1,428,293	-				-0.2
1,428,293	-				-0.4
1,428,294	+				+0.3
1,428,312	-				+0.3
1,428,322	-				+0.3
1,428,374	-				-0.1
1,428,375	+				+1.1
1,428,375	+				-0.6
1,428,375	+				+0.3
1,428,421	+		MMJJ_RS07800	0.12	+0.8
1,428,431	+		MMJJ_RS07800	0.13	+1.5
1,428,483	-		MMJJ_RS07800	0.16	+1.1
1,428,489	+		MMJJ_RS07800	0.16	+0.8
1,428,582	-		MMJJ_RS07800	0.22	+0.1
1,428,582	-		MMJJ_RS07800	0.22	+0.5
1,428,582	-		MMJJ_RS07800	0.22	-0.1
1,428,582	-		MMJJ_RS07800	0.22	-0.3
1,428,582	-		MMJJ_RS07800	0.22	+0.7
1,428,582	-		MMJJ_RS07800	0.22	+0.4
1,428,582	-		MMJJ_RS07800	0.22	+0.3
1,428,583	+		MMJJ_RS07800	0.22	+0.4
1,428,633	+		MMJJ_RS07800	0.25	-0.3
1,428,664	-				+0.4
1,428,681	+		MMJJ_RS07800	0.28	+1.6
1,428,681	+		MMJJ_RS07800	0.28	-0.7
1,428,704	-		MMJJ_RS07800	0.29	+0.2
1,428,726	+		MMJJ_RS07800	0.30	+0.4
1,428,736	+		MMJJ_RS07800	0.31	-0.1
1,428,824	-		MMJJ_RS07800	0.36	+0.6
1,428,824	-		MMJJ_RS07800	0.36	+0.4
1,428,824	-		MMJJ_RS07800	0.36	+0.7
1,428,825	+		MMJJ_RS07800	0.36	-2.9
1,428,825	+		MMJJ_RS07800	0.36	-0.2
1,428,825	+		MMJJ_RS07800	0.36	+0.6
1,428,828	+		MMJJ_RS07800	0.36	+0.4
1,428,835	-		MMJJ_RS07800	0.37	+0.2
1,428,836	+		MMJJ_RS07800	0.37	-0.1
1,428,903	-		MMJJ_RS07800	0.41	+0.7
1,428,904	+		MMJJ_RS07800	0.41	+1.9
1,428,953	+		MMJJ_RS07800	0.44	+0.0
1,428,984	-		MMJJ_RS07800	0.46	-0.5
1,428,984	-		MMJJ_RS07800	0.46	+0.5
1,428,985	+		MMJJ_RS07800	0.46	+0.0
1,429,095	-		MMJJ_RS07800	0.52	+0.7
1,429,096	+		MMJJ_RS07800	0.53	+1.3
1,429,116	-		MMJJ_RS07800	0.54	+0.6
1,429,116	-		MMJJ_RS07800	0.54	-0.1
1,429,146	-		MMJJ_RS07800	0.55	+0.8
1,429,147	+		MMJJ_RS07800	0.56	+0.4
1,429,147	+		MMJJ_RS07800	0.56	+0.1
1,429,172	-		MMJJ_RS07800	0.57	+1.1
1,429,172	-		MMJJ_RS07800	0.57	+0.7
1,429,172	-		MMJJ_RS07800	0.57	+0.7
1,429,173	+		MMJJ_RS07800	0.57	-0.3
1,429,185	+		MMJJ_RS07800	0.58	-2.7
1,429,203	+		MMJJ_RS07800	0.59	-0.4
1,429,245	-		MMJJ_RS07800	0.61	+0.1
1,429,246	+		MMJJ_RS07800	0.61	+0.3
1,429,246	+		MMJJ_RS07800	0.61	+0.1
1,429,251	+		MMJJ_RS07800	0.62	-1.0
1,429,283	-		MMJJ_RS07800	0.64	+0.4
1,429,283	-		MMJJ_RS07800	0.64	-0.0
1,429,283	-		MMJJ_RS07800	0.64	+1.4
1,429,284	+		MMJJ_RS07800	0.64	+1.2
1,429,284	+		MMJJ_RS07800	0.64	-1.1
1,429,391	-		MMJJ_RS07800	0.70	+0.2
1,429,391	-		MMJJ_RS07800	0.70	+0.0
1,429,392	+		MMJJ_RS07800	0.70	-0.0
1,429,492	-		MMJJ_RS07800	0.76	-1.3
1,429,493	+		MMJJ_RS07800	0.76	-0.3
1,429,505	+		MMJJ_RS07800	0.77	+0.4
1,429,544	+		MMJJ_RS07800	0.79	+2.0
1,429,626	-		MMJJ_RS07800	0.84	+1.3
1,429,626	-		MMJJ_RS07800	0.84	+0.2
1,429,626	-		MMJJ_RS07800	0.84	+1.2
1,429,626	-		MMJJ_RS07800	0.84	-0.6
1,429,627	+		MMJJ_RS07800	0.84	-0.5
1,429,644	+		MMJJ_RS07800	0.85	+0.4
1,429,644	+		MMJJ_RS07800	0.85	-0.5
1,429,658	-		MMJJ_RS07800	0.86	+0.9
1,429,658	-		MMJJ_RS07800	0.86	-0.0
1,429,659	+		MMJJ_RS07800	0.86	-0.0
1,429,659	+		MMJJ_RS07800	0.86	-0.3
1,429,659	+		MMJJ_RS07800	0.86	+0.1
1,429,695	-		MMJJ_RS07800	0.88	+1.4
1,429,701	-		MMJJ_RS07800	0.89	-0.1
1,429,702	+		MMJJ_RS07800	0.89	-0.3
1,429,787	+				+0.6
1,429,792	-				-0.0
1,429,892	-				-0.1
1,429,896	-				+0.4
1,429,896	-				+0.4
1,429,897	+				+0.1
1,429,919	+				+0.3
1,429,919	+				+3.2
1,429,923	-				+0.3
1,429,923	-				+0.0
1,429,923	-				+0.4
1,429,924	+				-0.2
1,429,924	+				-0.1
1,429,957	-				+0.9
1,429,958	+				+0.7
1,429,958	+				+0.8
1,429,958	+				+1.5
1,429,974	+				+0.5
1,430,006	+		MMJJ_RS07805	0.13	+1.0
1,430,010	+		MMJJ_RS07805	0.15	+0.1
1,430,010	+		MMJJ_RS07805	0.15	-0.4
1,430,044	-		MMJJ_RS07805	0.29	+1.0
1,430,044	-		MMJJ_RS07805	0.29	+0.7
1,430,044	-		MMJJ_RS07805	0.29	+0.3
1,430,100	-		MMJJ_RS07805	0.53	+0.6
1,430,101	+		MMJJ_RS07805	0.53	+0.9
1,430,103	+		MMJJ_RS07805	0.54	-2.5
1,430,103	+		MMJJ_RS07805	0.54	-0.3
1,430,106	-		MMJJ_RS07805	0.55	+0.7
1,430,110	-		MMJJ_RS07805	0.57	-0.9
1,430,115	-		MMJJ_RS07805	0.59	-0.9
1,430,154	-		MMJJ_RS07805	0.75	-0.6
1,430,155	+		MMJJ_RS07805	0.75	-0.2
1,430,155	+		MMJJ_RS07805	0.75	-0.1
1,430,180	+		MMJJ_RS07805	0.86	-1.2
1,430,186	+		MMJJ_RS07805	0.88	+0.2
1,430,211	-				+1.7
1,430,220	-				+0.5
1,430,221	+				+0.2
1,430,221	+				+0.3
1,430,221	+				+1.5
1,430,221	+				-0.4
1,430,221	+				-0.1
1,430,221	+				-0.5
1,430,275	-				+1.5
1,430,275	-				+0.2
1,430,275	-				-0.7
1,430,275	-				+0.7
1,430,275	-				+0.2
1,430,275	-				+1.1
1,430,275	-				-0.3
1,430,276	+				+0.3
1,430,276	+				+0.7
1,430,293	-				+0.7
1,430,293	-				+1.1
1,430,294	+				+0.3
1,430,327	-				-0.1
1,430,328	+				-0.5
1,430,328	+				-0.2
1,430,328	+				+0.2
1,430,347	-		MMJJ_RS07810	0.12	-0.1
1,430,402	-		MMJJ_RS07810	0.17	-0.3
1,430,406	-		MMJJ_RS07810	0.17	+0.9
1,430,407	+		MMJJ_RS07810	0.17	-0.3
1,430,444	-		MMJJ_RS07810	0.21	+0.3
1,430,445	+		MMJJ_RS07810	0.21	+0.7
1,430,528	-		MMJJ_RS07810	0.29	+0.6
1,430,529	+		MMJJ_RS07810	0.29	+0.1
1,430,529	+		MMJJ_RS07810	0.29	+0.5
1,430,529	+		MMJJ_RS07810	0.29	-0.2
1,430,584	-		MMJJ_RS07810	0.34	-0.6
1,430,598	+		MMJJ_RS07810	0.35	+0.9
1,430,701	-		MMJJ_RS07810	0.45	-0.0
1,430,701	-		MMJJ_RS07810	0.45	-0.6
1,430,780	-		MMJJ_RS07810	0.53	+0.6
1,430,781	+		MMJJ_RS07810	0.53	+0.4
1,430,858	-		MMJJ_RS07810	0.60	+0.6
1,430,888	+		MMJJ_RS07810	0.63	-0.1