Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS14985

Experiment: R2A with Magnesium sulfate 3.90625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS14980 and LRK54_RS14985 are separated by 32 nucleotidesLRK54_RS14985 and LRK54_RS14990 are separated by 84 nucleotides LRK54_RS14980: LRK54_RS14980 - recombinase RecA, at 3,311,792 to 3,312,829 _RS14980 LRK54_RS14985: LRK54_RS14985 - recombination regulator RecX, at 3,312,862 to 3,313,398 _RS14985 LRK54_RS14990: LRK54_RS14990 - alanine--tRNA ligase, at 3,313,483 to 3,316,125 _RS14990 Position (kb) 3312 3313 3314Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3311.981 kb on + strand, within LRK54_RS14980at 3311.981 kb on + strand, within LRK54_RS14980at 3311.981 kb on + strand, within LRK54_RS14980at 3311.981 kb on + strand, within LRK54_RS14980at 3311.981 kb on + strand, within LRK54_RS14980at 3311.981 kb on + strand, within LRK54_RS14980at 3311.981 kb on + strand, within LRK54_RS14980at 3311.981 kb on + strand, within LRK54_RS14980at 3311.982 kb on - strand, within LRK54_RS14980at 3311.982 kb on - strand, within LRK54_RS14980at 3311.982 kb on - strand, within LRK54_RS14980at 3311.982 kb on - strand, within LRK54_RS14980at 3311.982 kb on - strand, within LRK54_RS14980at 3311.982 kb on - strand, within LRK54_RS14980at 3311.982 kb on - strand, within LRK54_RS14980at 3312.095 kb on + strand, within LRK54_RS14980at 3312.095 kb on + strand, within LRK54_RS14980at 3312.095 kb on + strand, within LRK54_RS14980at 3312.095 kb on + strand, within LRK54_RS14980at 3312.095 kb on + strand, within LRK54_RS14980at 3312.095 kb on + strand, within LRK54_RS14980at 3312.096 kb on - strand, within LRK54_RS14980at 3312.096 kb on - strand, within LRK54_RS14980at 3312.096 kb on - strand, within LRK54_RS14980at 3312.096 kb on - strand, within LRK54_RS14980at 3312.096 kb on - strand, within LRK54_RS14980at 3312.096 kb on - strand, within LRK54_RS14980at 3312.440 kb on + strand, within LRK54_RS14980at 3312.440 kb on + strand, within LRK54_RS14980at 3312.440 kb on + strand, within LRK54_RS14980at 3312.440 kb on + strand, within LRK54_RS14980at 3312.441 kb on - strand, within LRK54_RS14980at 3312.441 kb on - strand, within LRK54_RS14980at 3312.441 kb on - strand, within LRK54_RS14980at 3312.441 kb on - strand, within LRK54_RS14980at 3312.441 kb on - strand, within LRK54_RS14980at 3312.578 kb on + strand, within LRK54_RS14980at 3312.578 kb on + strand, within LRK54_RS14980at 3312.578 kb on + strand, within LRK54_RS14980at 3312.659 kb on + strand, within LRK54_RS14980at 3312.659 kb on + strand, within LRK54_RS14980at 3312.659 kb on + strand, within LRK54_RS14980at 3312.659 kb on + strand, within LRK54_RS14980at 3312.659 kb on + strand, within LRK54_RS14980at 3312.660 kb on - strand, within LRK54_RS14980at 3312.660 kb on - strand, within LRK54_RS14980at 3312.660 kb on - strand, within LRK54_RS14980at 3312.660 kb on - strand, within LRK54_RS14980at 3312.665 kb on + strand, within LRK54_RS14980at 3312.665 kb on + strand, within LRK54_RS14980at 3312.665 kb on + strand, within LRK54_RS14980at 3312.665 kb on + strand, within LRK54_RS14980at 3312.665 kb on + strand, within LRK54_RS14980at 3312.665 kb on + strand, within LRK54_RS14980at 3312.665 kb on + strand, within LRK54_RS14980at 3312.665 kb on + strand, within LRK54_RS14980at 3312.665 kb on + strand, within LRK54_RS14980at 3312.665 kb on + strand, within LRK54_RS14980at 3312.665 kb on + strand, within LRK54_RS14980at 3312.665 kb on + strand, within LRK54_RS14980at 3312.665 kb on + strand, within LRK54_RS14980at 3312.665 kb on + strand, within LRK54_RS14980at 3312.665 kb on + strand, within LRK54_RS14980at 3312.665 kb on + strand, within LRK54_RS14980at 3312.665 kb on + strand, within LRK54_RS14980at 3312.666 kb on - strand, within LRK54_RS14980at 3312.666 kb on - strand, within LRK54_RS14980at 3312.666 kb on - strand, within LRK54_RS14980at 3312.666 kb on - strand, within LRK54_RS14980at 3312.666 kb on - strand, within LRK54_RS14980at 3312.666 kb on - strand, within LRK54_RS14980at 3312.666 kb on - strand, within LRK54_RS14980at 3312.666 kb on - strand, within LRK54_RS14980at 3312.666 kb on - strand, within LRK54_RS14980at 3312.775 kb on - strandat 3312.952 kb on + strand, within LRK54_RS14985at 3312.952 kb on + strand, within LRK54_RS14985at 3312.953 kb on - strand, within LRK54_RS14985at 3312.953 kb on - strand, within LRK54_RS14985at 3313.031 kb on - strand, within LRK54_RS14985at 3313.081 kb on + strand, within LRK54_RS14985at 3313.081 kb on + strand, within LRK54_RS14985at 3313.081 kb on + strand, within LRK54_RS14985at 3313.081 kb on + strand, within LRK54_RS14985at 3313.081 kb on + strand, within LRK54_RS14985at 3313.082 kb on - strand, within LRK54_RS14985at 3313.082 kb on - strand, within LRK54_RS14985at 3313.082 kb on - strand, within LRK54_RS14985at 3313.082 kb on - strand, within LRK54_RS14985at 3313.082 kb on - strand, within LRK54_RS14985at 3313.082 kb on - strand, within LRK54_RS14985at 3313.082 kb on - strand, within LRK54_RS14985at 3313.194 kb on + strand, within LRK54_RS14985at 3313.299 kb on + strand, within LRK54_RS14985at 3313.349 kb on + strandat 3313.349 kb on + strandat 3313.349 kb on + strandat 3313.349 kb on + strandat 3313.349 kb on + strandat 3313.349 kb on + strandat 3313.349 kb on + strandat 3313.349 kb on + strandat 3313.359 kb on + strandat 3313.359 kb on + strandat 3313.359 kb on + strandat 3313.389 kb on + strandat 3313.389 kb on + strandat 3313.389 kb on + strandat 3313.389 kb on + strandat 3313.389 kb on + strandat 3313.389 kb on + strandat 3313.389 kb on + strandat 3313.389 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Magnesium sulfate 3.90625 mM
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3,311,981 + LRK54_RS14980 0.18 -0.1
3,311,981 + LRK54_RS14980 0.18 -0.5
3,311,981 + LRK54_RS14980 0.18 -0.7
3,311,981 + LRK54_RS14980 0.18 -1.0
3,311,981 + LRK54_RS14980 0.18 +0.2
3,311,981 + LRK54_RS14980 0.18 -0.3
3,311,981 + LRK54_RS14980 0.18 -1.3
3,311,981 + LRK54_RS14980 0.18 +0.9
3,311,982 - LRK54_RS14980 0.18 -2.3
3,311,982 - LRK54_RS14980 0.18 +1.6
3,311,982 - LRK54_RS14980 0.18 -0.9
3,311,982 - LRK54_RS14980 0.18 -1.0
3,311,982 - LRK54_RS14980 0.18 +0.4
3,311,982 - LRK54_RS14980 0.18 +1.6
3,311,982 - LRK54_RS14980 0.18 +0.0
3,312,095 + LRK54_RS14980 0.29 -0.4
3,312,095 + LRK54_RS14980 0.29 +1.1
3,312,095 + LRK54_RS14980 0.29 +1.2
3,312,095 + LRK54_RS14980 0.29 +0.6
3,312,095 + LRK54_RS14980 0.29 -2.2
3,312,095 + LRK54_RS14980 0.29 -0.7
3,312,096 - LRK54_RS14980 0.29 +2.6
3,312,096 - LRK54_RS14980 0.29 -0.6
3,312,096 - LRK54_RS14980 0.29 -1.0
3,312,096 - LRK54_RS14980 0.29 -0.7
3,312,096 - LRK54_RS14980 0.29 -0.4
3,312,096 - LRK54_RS14980 0.29 +0.0
3,312,440 + LRK54_RS14980 0.62 -1.6
3,312,440 + LRK54_RS14980 0.62 -0.7
3,312,440 + LRK54_RS14980 0.62 -1.7
3,312,440 + LRK54_RS14980 0.62 -0.7
3,312,441 - LRK54_RS14980 0.63 -1.4
3,312,441 - LRK54_RS14980 0.63 +0.0
3,312,441 - LRK54_RS14980 0.63 -2.6
3,312,441 - LRK54_RS14980 0.63 -0.9
3,312,441 - LRK54_RS14980 0.63 -2.5
3,312,578 + LRK54_RS14980 0.76 +1.9
3,312,578 + LRK54_RS14980 0.76 +0.0
3,312,578 + LRK54_RS14980 0.76 -0.7
3,312,659 + LRK54_RS14980 0.84 -2.6
3,312,659 + LRK54_RS14980 0.84 -0.3
3,312,659 + LRK54_RS14980 0.84 +0.2
3,312,659 + LRK54_RS14980 0.84 +0.0
3,312,659 + LRK54_RS14980 0.84 +0.9
3,312,660 - LRK54_RS14980 0.84 -2.4
3,312,660 - LRK54_RS14980 0.84 -1.4
3,312,660 - LRK54_RS14980 0.84 -1.0
3,312,660 - LRK54_RS14980 0.84 -0.1
3,312,665 + LRK54_RS14980 0.84 -0.7
3,312,665 + LRK54_RS14980 0.84 -1.4
3,312,665 + LRK54_RS14980 0.84 -0.7
3,312,665 + LRK54_RS14980 0.84 +0.6
3,312,665 + LRK54_RS14980 0.84 -1.6
3,312,665 + LRK54_RS14980 0.84 +0.6
3,312,665 + LRK54_RS14980 0.84 -2.7
3,312,665 + LRK54_RS14980 0.84 -2.5
3,312,665 + LRK54_RS14980 0.84 -2.0
3,312,665 + LRK54_RS14980 0.84 +1.6
3,312,665 + LRK54_RS14980 0.84 -1.6
3,312,665 + LRK54_RS14980 0.84 -1.2
3,312,665 + LRK54_RS14980 0.84 -2.4
3,312,665 + LRK54_RS14980 0.84 -0.4
3,312,665 + LRK54_RS14980 0.84 -1.5
3,312,665 + LRK54_RS14980 0.84 -1.4
3,312,665 + LRK54_RS14980 0.84 -3.2
3,312,666 - LRK54_RS14980 0.84 +0.0
3,312,666 - LRK54_RS14980 0.84 -1.5
3,312,666 - LRK54_RS14980 0.84 -2.0
3,312,666 - LRK54_RS14980 0.84 -2.1
3,312,666 - LRK54_RS14980 0.84 -0.4
3,312,666 - LRK54_RS14980 0.84 -2.0
3,312,666 - LRK54_RS14980 0.84 +0.6
3,312,666 - LRK54_RS14980 0.84 -1.0
3,312,666 - LRK54_RS14980 0.84 -2.0
3,312,775 - -1.0
3,312,952 + LRK54_RS14985 0.17 +0.7
3,312,952 + LRK54_RS14985 0.17 -0.7
3,312,953 - LRK54_RS14985 0.17 -2.0
3,312,953 - LRK54_RS14985 0.17 +0.6
3,313,031 - LRK54_RS14985 0.31 -1.2
3,313,081 + LRK54_RS14985 0.41 -0.8
3,313,081 + LRK54_RS14985 0.41 -0.1
3,313,081 + LRK54_RS14985 0.41 -2.7
3,313,081 + LRK54_RS14985 0.41 +0.8
3,313,081 + LRK54_RS14985 0.41 -2.5
3,313,082 - LRK54_RS14985 0.41 +1.6
3,313,082 - LRK54_RS14985 0.41 -0.4
3,313,082 - LRK54_RS14985 0.41 +1.1
3,313,082 - LRK54_RS14985 0.41 -0.4
3,313,082 - LRK54_RS14985 0.41 -1.2
3,313,082 - LRK54_RS14985 0.41 +0.2
3,313,082 - LRK54_RS14985 0.41 -1.1
3,313,194 + LRK54_RS14985 0.62 +0.5
3,313,299 + LRK54_RS14985 0.81 +0.4
3,313,349 + +0.6
3,313,349 + +0.4
3,313,349 + -0.5
3,313,349 + -0.5
3,313,349 + -0.4
3,313,349 + +0.6
3,313,349 + +0.0
3,313,349 + +0.0
3,313,359 + +0.6
3,313,359 + +0.2
3,313,359 + -0.3
3,313,389 + -1.6
3,313,389 + +0.5
3,313,389 + -0.6
3,313,389 + +0.8
3,313,389 + +1.8
3,313,389 + +0.4
3,313,389 + +0.5
3,313,389 + -1.9

Or see this region's nucleotide sequence