Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS09655

Experiment: R2A with Magnesium sulfate 3.90625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Magnesium sulfate 3.90625 mM
2,113,634	-		LRK54_RS09645	0.34	-1.5
2,113,634	-		LRK54_RS09645	0.34	+0.7
2,113,634	-		LRK54_RS09645	0.34	-0.9
2,113,634	-		LRK54_RS09645	0.34	-2.1
2,113,634	-		LRK54_RS09645	0.34	-1.6
2,113,634	-		LRK54_RS09645	0.34	-1.1
2,113,634	-		LRK54_RS09645	0.34	-0.8
2,113,634	-		LRK54_RS09645	0.34	+0.1
2,113,634	-		LRK54_RS09645	0.34	-1.0
2,113,634	-		LRK54_RS09645	0.34	+0.4
2,113,634	-		LRK54_RS09645	0.34	-1.1
2,113,634	-		LRK54_RS09645	0.34	-1.5
2,113,634	-		LRK54_RS09645	0.34	-1.3
2,113,634	-		LRK54_RS09645	0.34	+0.7
2,113,634	-		LRK54_RS09645	0.34	-1.3
2,113,634	-		LRK54_RS09645	0.34	+0.1
2,113,690	+		LRK54_RS09645	0.48	-0.6
2,113,690	+		LRK54_RS09645	0.48	-0.1
2,113,690	+		LRK54_RS09645	0.48	+1.9
2,113,690	+		LRK54_RS09645	0.48	-0.9
2,113,691	-		LRK54_RS09645	0.48	-1.8
2,113,691	-		LRK54_RS09645	0.48	-0.6
2,113,691	-		LRK54_RS09645	0.48	-2.5
2,113,691	-		LRK54_RS09645	0.48	-2.4
2,113,783	-		LRK54_RS09645	0.70	-0.6
2,113,783	-		LRK54_RS09645	0.70	+0.8
2,113,783	-		LRK54_RS09645	0.70	+0.3
2,113,783	-		LRK54_RS09645	0.70	+0.7
2,113,783	-		LRK54_RS09645	0.70	-0.9
2,113,783	-		LRK54_RS09645	0.70	+0.1
2,113,783	-		LRK54_RS09645	0.70	-0.6
2,113,783	-		LRK54_RS09645	0.70	-1.6
2,113,783	-		LRK54_RS09645	0.70	-0.9
2,113,783	-		LRK54_RS09645	0.70	-1.4
2,113,783	-		LRK54_RS09645	0.70	+1.7
2,113,783	-		LRK54_RS09645	0.70	-0.4
2,113,783	-		LRK54_RS09645	0.70	-1.1
2,113,783	-		LRK54_RS09645	0.70	-0.7
2,113,783	-		LRK54_RS09645	0.70	-1.8
2,113,783	-		LRK54_RS09645	0.70	-1.7
2,113,879	+				-0.2
2,113,879	+				-0.2
2,113,879	+				-1.1
2,113,880	-				+0.7
2,113,880	-				+0.0
2,113,880	-				-0.2
2,113,880	-				+0.1
2,113,981	+				-0.6
2,113,981	+				+0.7
2,113,981	+				-1.0
2,113,981	+				-0.1
2,113,981	+				-0.4
2,113,982	-				-2.4
2,113,982	-				+0.7
2,113,982	-				-1.9
2,113,982	-				-1.6
2,113,982	-				-0.5
2,114,020	+		LRK54_RS09650	0.16	-0.6
2,114,020	+		LRK54_RS09650	0.16	+0.7
2,114,020	+		LRK54_RS09650	0.16	-0.2
2,114,020	+		LRK54_RS09650	0.16	-0.1
2,114,020	+		LRK54_RS09650	0.16	-1.9
2,114,020	+		LRK54_RS09650	0.16	+0.1
2,114,020	+		LRK54_RS09650	0.16	+0.6
2,114,020	+		LRK54_RS09650	0.16	+0.2
2,114,020	+		LRK54_RS09650	0.16	-0.1
2,114,020	+		LRK54_RS09650	0.16	-0.9
2,114,020	+		LRK54_RS09650	0.16	-0.8
2,114,020	+		LRK54_RS09650	0.16	+0.3
2,114,021	-		LRK54_RS09650	0.17	+0.2
2,114,021	-		LRK54_RS09650	0.17	-2.7
2,114,021	-		LRK54_RS09650	0.17	-2.4
2,114,021	-		LRK54_RS09650	0.17	-1.1
2,114,021	-		LRK54_RS09650	0.17	-0.6
2,114,021	-		LRK54_RS09650	0.17	-1.0
2,114,021	-		LRK54_RS09650	0.17	-0.6
2,114,021	-		LRK54_RS09650	0.17	-2.3
2,114,021	-		LRK54_RS09650	0.17	+0.0
2,114,058	+		LRK54_RS09650	0.30	-0.1
2,114,058	+		LRK54_RS09650	0.30	+0.9
2,114,058	+		LRK54_RS09650	0.30	-0.4
2,114,058	+		LRK54_RS09650	0.30	-0.0
2,114,058	+		LRK54_RS09650	0.30	+1.7
2,114,058	+		LRK54_RS09650	0.30	-0.4
2,114,058	+		LRK54_RS09650	0.30	-1.7
2,114,058	+		LRK54_RS09650	0.30	-0.4
2,114,058	+		LRK54_RS09650	0.30	+0.5
2,114,058	+		LRK54_RS09650	0.30	-1.2
2,114,058	+		LRK54_RS09650	0.30	-0.6
2,114,058	+		LRK54_RS09650	0.30	+0.0
2,114,058	+		LRK54_RS09650	0.30	-0.8
2,114,058	+		LRK54_RS09650	0.30	-0.9
2,114,058	+		LRK54_RS09650	0.30	+0.6
2,114,058	+		LRK54_RS09650	0.30	-0.5
2,114,058	+		LRK54_RS09650	0.30	-0.0
2,114,058	+		LRK54_RS09650	0.30	+0.2
2,114,058	+		LRK54_RS09650	0.30	-2.4
2,114,058	+		LRK54_RS09650	0.30	-1.3
2,114,058	+		LRK54_RS09650	0.30	-2.1
2,114,059	-		LRK54_RS09650	0.30	-0.1
2,114,059	-		LRK54_RS09650	0.30	+0.5
2,114,059	-		LRK54_RS09650	0.30	-1.1
2,114,059	-		LRK54_RS09650	0.30	+0.9
2,114,059	-		LRK54_RS09650	0.30	-0.3
2,114,059	-		LRK54_RS09650	0.30	+0.1
2,114,059	-		LRK54_RS09650	0.30	-1.8
2,114,059	-		LRK54_RS09650	0.30	+0.1
2,114,059	-		LRK54_RS09650	0.30	-0.6
2,114,059	-		LRK54_RS09650	0.30	+0.3
2,114,059	-		LRK54_RS09650	0.30	-1.0
2,114,059	-		LRK54_RS09650	0.30	-1.1
2,114,059	-		LRK54_RS09650	0.30	-3.5
2,114,059	-		LRK54_RS09650	0.30	-0.6
2,114,059	-		LRK54_RS09650	0.30	-2.2
2,114,059	-		LRK54_RS09650	0.30	+0.1
2,114,059	-		LRK54_RS09650	0.30	-1.8
2,114,256	-				-0.9
2,114,354	+				+0.1
2,114,355	-				+0.1
2,114,355	-				-2.7
2,114,365	+				-0.1
2,114,365	+				-0.9
2,114,365	+				+1.8
2,114,366	-				+0.1
2,114,366	-				-1.8
2,114,382	+				-0.6
2,114,382	+				-2.4
2,114,382	+				-1.1
2,114,382	+				-0.8
2,114,382	+				+0.2
2,114,382	+				+0.7
2,114,382	+				+0.3
2,114,382	+				-0.4
2,114,382	+				+1.5
2,114,382	+				-0.7
2,114,382	+				+0.1
2,114,383	-				-0.9
2,114,383	-				-0.9
2,114,383	-				-1.0
2,114,383	-				-1.3
2,114,383	-				-1.3
2,114,383	-				-1.0
2,114,430	+				-0.5
2,114,430	+				+0.9
2,114,430	+				-0.2
2,114,431	-				+1.7
2,114,431	-				-1.1
2,114,431	-				+0.3
2,114,431	-				-0.6
2,114,434	+				+0.1
2,114,434	+				-0.1
2,114,434	+				+0.1
2,114,434	+				-0.9
2,114,434	+				-0.2
2,114,434	+				-2.8
2,114,434	+				+0.4
2,114,434	+				-0.0
2,114,434	+				-0.3
2,114,434	+				-0.9
2,114,434	+				+0.1
2,114,434	+				+1.0
2,114,434	+				-0.3
2,114,434	+				+1.4
2,114,434	+				-3.0
2,114,434	+				+0.0
2,114,434	+				-0.6
2,114,434	+				-0.6
2,114,434	+				-0.5
2,114,434	+				-0.6
2,114,435	-				-0.6
2,114,435	-				+0.7
2,114,435	-				+0.1
2,114,435	-				-0.3
2,114,435	-				+0.1
2,114,435	-				-1.8
2,114,435	-				-1.2
2,114,435	-				-1.5
2,114,435	-				+0.6
2,114,435	-				-2.5
2,114,435	-				-0.3
2,114,435	-				-0.2
2,114,435	-				-1.3
2,114,435	-				-0.6
2,114,435	-				-0.5
2,114,435	-				+0.1
2,114,435	-				-1.1
2,114,435	-				+0.1
2,114,435	-				+1.7
2,114,435	-				-1.1
2,114,435	-				-0.3
2,114,435	-				+0.3
2,114,446	+				+0.4
2,114,446	+				-0.5
2,114,446	+				-1.3
2,114,446	+				-0.6
2,114,446	+				+0.1
2,114,447	-				-0.4
2,114,447	-				-2.1
2,114,447	-				+1.1
2,114,447	-				-0.3
2,114,447	-				+0.8
2,114,447	-				-2.0
2,114,450	+				-1.5
2,114,450	+				-0.5
2,114,450	+				-0.2
2,114,450	+				+0.2
2,114,450	+				-0.4
2,114,450	+				-0.3
2,114,450	+				+0.0
2,114,450	+				-0.2
2,114,450	+				-0.1
2,114,450	+				+1.1
2,114,450	+				-1.2
2,114,450	+				-0.0
2,114,450	+				-2.3
2,114,450	+				-1.4
2,114,450	+				-0.1
2,114,450	+				-0.4
2,114,450	+				-2.1
2,114,450	+				-1.6
2,114,450	+				+0.7
2,114,450	+				-0.6
2,114,450	+				+0.7
2,114,450	+				+1.1
2,114,450	+				-0.9
2,114,451	-				+0.0
2,114,451	-				-0.6
2,114,451	-				+0.7
2,114,451	-				-1.0
2,114,451	-				-0.5
2,114,451	-				-0.0
2,114,451	-				+0.7
2,114,451	-				+1.0
2,114,451	-				+0.4
2,114,451	-				+0.4
2,114,451	-				-1.8
2,114,451	-				-0.8
2,114,451	-				-0.6
2,114,451	-				-0.1
2,114,451	-				-2.2
2,114,451	-				-0.3
2,114,470	+				+0.3
2,114,470	+				-0.9
2,114,470	+				-1.6
2,114,470	+				-1.5
2,114,470	+				-0.6
2,114,470	+				-1.3
2,114,470	+				-0.1
2,114,471	-				-0.6
2,114,471	-				-0.6
2,114,471	-				-0.2
2,114,471	-				-1.8
2,114,471	-				-1.1
2,114,471	-				+0.5
2,114,471	-				-0.3
2,114,471	-				+0.4
2,114,471	-				-0.3
2,114,471	-				-2.3
2,114,482	+				+0.4
2,114,482	+				-0.3
2,114,482	+				-0.9
2,114,483	-				-0.9
2,114,524	+				-0.7
2,114,524	+				-0.6
2,114,524	+				-0.3
2,114,524	+				-1.6
2,114,524	+				+0.3
2,114,524	+				+0.7
2,114,524	+				-0.6
2,114,524	+				-1.3
2,114,524	+				+1.3
2,114,524	+				-0.3
2,114,524	+				+0.3
2,114,524	+				-1.0
2,114,525	-				-1.2
2,114,525	-				-1.8
2,114,525	-				+0.1
2,114,525	-				-2.2
2,114,525	-				-1.5
2,114,525	-				+0.1
2,114,525	-				-0.5
2,114,525	-				-1.8
2,114,525	-				-0.9
2,114,525	-				-0.4
2,114,525	-				-1.8
2,114,525	-				-1.8
2,114,548	+				-1.3
2,114,548	+				-0.0
2,114,548	+				-1.6
2,114,548	+				-0.6
2,114,548	+				+1.1
2,114,549	-				+0.4
2,114,549	-				-1.5
2,114,549	-				-0.3
2,114,549	-				-1.1
2,114,549	-				-0.2
2,114,549	-				-0.1
2,114,549	-				-1.1
2,114,549	-				-2.7
2,114,553	+				-0.4
2,114,553	+				-0.4
2,114,553	+				+0.7
2,114,553	+				+0.5
2,114,553	+				-0.3
2,114,553	+				-2.7
2,114,553	+				-2.0
2,114,554	-				-1.5
2,114,639	+				-2.4
2,114,639	+				-0.9
2,114,639	+				-3.3
2,114,639	+				-2.0
2,114,639	+				-0.2
2,114,639	+				-0.9
2,114,639	+				-1.6
2,114,639	+				-1.1
2,114,639	+				-0.5
2,114,639	+				+2.0
2,114,639	+				-2.2
2,114,639	+				-2.5
2,114,639	+				-1.9
2,114,639	+				+1.7
2,114,639	+				-0.5
2,114,639	+				-1.3
2,114,639	+				-2.9
2,114,639	+				-0.9
2,114,639	+				-2.9
2,114,639	+				-1.1
2,114,639	+				-2.1
2,114,639	+				-1.8
2,114,639	+				-0.9
2,114,639	+				+0.1
2,114,639	+				-0.6
2,114,639	+				-1.4
2,114,639	+				-1.1
2,114,639	+				-0.9
2,114,639	+				-1.3
2,114,639	+				-3.6
2,114,639	+				-1.1
2,114,639	+				-0.9
2,114,639	+				-0.5
2,114,639	+				-2.3
2,114,639	+				-1.9
2,114,639	+				-0.3
2,114,639	+				-1.3
2,114,639	+				-1.8
2,114,639	+				-0.6
2,114,639	+				-1.2
2,114,639	+				-2.8
2,114,639	+				-2.6
2,114,639	+				-0.1
2,114,639	+				-0.8
2,114,639	+				+1.7
2,114,639	+				-2.0
2,114,639	+				-1.6
2,114,639	+				-2.7
2,114,639	+				+1.1
2,114,640	-				-1.2
2,114,640	-				-2.1
2,114,640	-				-1.3
2,114,640	-				-1.9
2,114,640	-				-0.6
2,114,640	-				-1.7
2,114,640	-				-1.1
2,114,640	-				-0.9
2,114,640	-				-1.4
2,114,640	-				-1.3
2,114,640	-				-2.0
2,114,640	-				+1.7
2,114,640	-				-2.8
2,114,640	-				-1.1
2,114,640	-				+0.1
2,114,640	-				-1.2
2,114,640	-				-1.2
2,114,640	-				+0.1
2,114,640	-				-1.1
2,114,640	-				-1.1
2,114,640	-				-2.0
2,114,640	-				-1.3
2,114,640	-				+1.7
2,114,640	-				-4.0
2,114,640	-				-1.9
2,114,640	-				-0.4
2,114,640	-				-0.9
2,114,640	-				-0.9
2,114,640	-				-0.5
2,114,640	-				-2.3
2,114,640	-				+0.1
2,114,640	-				+0.7
2,114,640	-				-0.9
2,114,640	-				-2.8
2,114,640	-				-1.9
2,114,640	-				-1.5
2,114,640	-				-2.5
2,114,650	+				-1.8
2,114,650	+				-0.5
2,114,650	+				-1.2
2,114,650	+				-0.6
2,114,650	+				-1.3
2,114,650	+				-2.3
2,114,650	+				-1.1
2,114,650	+				+0.0
2,114,650	+				-0.9
2,114,650	+				-1.3
2,114,650	+				-2.1
2,114,650	+				-0.8
2,114,650	+				-1.6
2,114,650	+				-1.8
2,114,650	+				-0.8
2,114,650	+				-1.6
2,114,651	-				+0.7
2,114,651	-				-1.3
2,114,651	-				-1.4
2,114,651	-				-2.5
2,114,651	-				+0.0
2,114,651	-				+0.7
2,114,651	-				-1.6
2,114,651	-				-1.6
2,114,651	-				-1.3
2,114,841	+		LRK54_RS09655	0.57	-0.7
2,114,841	+		LRK54_RS09655	0.57	-2.8
2,114,841	+		LRK54_RS09655	0.57	+0.7
2,114,841	+		LRK54_RS09655	0.57	-0.8
2,114,841	+		LRK54_RS09655	0.57	-2.3
2,114,841	+		LRK54_RS09655	0.57	-1.0
2,114,841	+		LRK54_RS09655	0.57	-1.4
2,114,841	+		LRK54_RS09655	0.57	-1.1
2,114,841	+		LRK54_RS09655	0.57	-2.8
2,114,841	+		LRK54_RS09655	0.57	-0.6
2,114,842	-		LRK54_RS09655	0.57	-1.2
2,114,842	-		LRK54_RS09655	0.57	-1.6
2,114,842	-		LRK54_RS09655	0.57	-0.9
2,114,842	-		LRK54_RS09655	0.57	-1.5
2,114,842	-		LRK54_RS09655	0.57	-1.6
2,114,842	-		LRK54_RS09655	0.57	-0.5
2,114,842	-		LRK54_RS09655	0.57	+1.7
2,114,842	-		LRK54_RS09655	0.57	-2.2
2,114,842	-		LRK54_RS09655	0.57	+0.8
2,114,842	-		LRK54_RS09655	0.57	-0.6
2,114,842	-		LRK54_RS09655	0.57	-0.9
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2,115,808	+				-0.1