Experiment: casaminos
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS21475 and BPHYT_RS21480 overlap by 25 nucleotides BPHYT_RS21480 and BPHYT_RS21485 are separated by 73 nucleotides BPHYT_RS21485 and BPHYT_RS21490 are separated by 175 nucleotides
BPHYT_RS21475: BPHYT_RS21475 - hypothetical protein, at 378,359 to 379,297
_RS21475
BPHYT_RS21480: BPHYT_RS21480 - hypothetical protein, at 379,273 to 379,863
_RS21480
BPHYT_RS21485: BPHYT_RS21485 - hypothetical protein, at 379,937 to 380,521
_RS21485
BPHYT_RS21490: BPHYT_RS21490 - ABC transporter permease, at 380,697 to 382,637
_RS21490
Position (kb) 379
380
381 Strain fitness (log2 ratio) -1
0
1 at 379.771 kb on + strand, within BPHYT_RS21480 at 379.772 kb on - strand, within BPHYT_RS21480 at 379.772 kb on - strand, within BPHYT_RS21480 at 379.774 kb on - strand, within BPHYT_RS21480 at 380.048 kb on - strand, within BPHYT_RS21485 at 380.575 kb on + strand at 380.576 kb on - strand at 380.576 kb on - strand at 380.580 kb on + strand at 380.580 kb on + strand at 380.580 kb on + strand at 380.581 kb on - strand at 380.827 kb on - strand at 380.842 kb on - strand at 380.851 kb on - strand at 380.877 kb on - strand at 380.970 kb on + strand, within BPHYT_RS21490 at 380.970 kb on + strand, within BPHYT_RS21490 at 380.970 kb on + strand, within BPHYT_RS21490 at 380.971 kb on - strand, within BPHYT_RS21490 at 381.129 kb on + strand, within BPHYT_RS21490 at 381.355 kb on + strand, within BPHYT_RS21490
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos remove 379,771 + BPHYT_RS21480 0.84 -0.8 379,772 - BPHYT_RS21480 0.84 +0.3 379,772 - BPHYT_RS21480 0.84 +0.3 379,774 - BPHYT_RS21480 0.85 -0.3 380,048 - BPHYT_RS21485 0.19 -0.8 380,575 + +0.8 380,576 - -0.9 380,576 - +0.3 380,580 + +0.2 380,580 + -0.4 380,580 + +0.9 380,581 - -1.3 380,827 - -1.6 380,842 - +0.0 380,851 - -0.3 380,877 - -1.6 380,970 + BPHYT_RS21490 0.14 +0.6 380,970 + BPHYT_RS21490 0.14 -1.0 380,970 + BPHYT_RS21490 0.14 -0.1 380,971 - BPHYT_RS21490 0.14 -0.0 381,129 + BPHYT_RS21490 0.22 +1.1 381,355 + BPHYT_RS21490 0.34 -0.6
Or see this region's nucleotide sequence