Experiment: casaminos
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03640 and BPHYT_RS03645 are separated by 84 nucleotides BPHYT_RS03645 and BPHYT_RS03650 are separated by 45 nucleotides
BPHYT_RS03640: BPHYT_RS03640 - phosphoribosylformylglycinamidine cyclo-ligase, at 826,890 to 827,957
_RS03640
BPHYT_RS03645: BPHYT_RS03645 - tRNA dimethylallyltransferase, at 828,042 to 828,989
_RS03645
BPHYT_RS03650: BPHYT_RS03650 - DNA mismatch repair protein, at 829,035 to 831,098
_RS03650
Position (kb) 828
829 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 827.241 kb on + strand, within BPHYT_RS03640 at 827.364 kb on + strand, within BPHYT_RS03640 at 827.427 kb on - strand, within BPHYT_RS03640 at 827.597 kb on + strand, within BPHYT_RS03640 at 827.598 kb on - strand, within BPHYT_RS03640 at 827.684 kb on + strand, within BPHYT_RS03640 at 827.955 kb on + strand at 827.986 kb on + strand at 828.196 kb on + strand, within BPHYT_RS03645 at 828.271 kb on - strand, within BPHYT_RS03645 at 828.474 kb on - strand, within BPHYT_RS03645 at 828.667 kb on + strand, within BPHYT_RS03645 at 828.978 kb on - strand at 829.084 kb on + strand at 829.085 kb on - strand at 829.258 kb on + strand, within BPHYT_RS03650 at 829.259 kb on - strand, within BPHYT_RS03650 at 829.508 kb on - strand, within BPHYT_RS03650 at 829.508 kb on - strand, within BPHYT_RS03650 at 829.576 kb on + strand, within BPHYT_RS03650 at 829.577 kb on - strand, within BPHYT_RS03650 at 829.577 kb on - strand, within BPHYT_RS03650 at 829.667 kb on - strand, within BPHYT_RS03650
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos remove 827,241 + BPHYT_RS03640 0.33 -3.8 827,364 + BPHYT_RS03640 0.44 -4.9 827,427 - BPHYT_RS03640 0.50 -1.9 827,597 + BPHYT_RS03640 0.66 -2.2 827,598 - BPHYT_RS03640 0.66 -3.1 827,684 + BPHYT_RS03640 0.74 -4.1 827,955 + -1.2 827,986 + -1.4 828,196 + BPHYT_RS03645 0.16 -1.4 828,271 - BPHYT_RS03645 0.24 -1.4 828,474 - BPHYT_RS03645 0.46 -1.0 828,667 + BPHYT_RS03645 0.66 -1.6 828,978 - +0.0 829,084 + +0.7 829,085 - -1.2 829,258 + BPHYT_RS03650 0.11 -0.1 829,259 - BPHYT_RS03650 0.11 +0.0 829,508 - BPHYT_RS03650 0.23 +0.2 829,508 - BPHYT_RS03650 0.23 +0.0 829,576 + BPHYT_RS03650 0.26 +0.7 829,577 - BPHYT_RS03650 0.26 +0.3 829,577 - BPHYT_RS03650 0.26 +0.1 829,667 - BPHYT_RS03650 0.31 -0.2
Or see this region's nucleotide sequence