Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2727
Experiment: MoYLS4 with methylglyoxal 0.0156 %
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | MoYLS4 with methylglyoxal 0.0156 % |
---|---|---|---|---|---|
remove | |||||
3,449,839 | + | -1.2 | |||
3,449,839 | + | -0.0 | |||
3,449,839 | + | -0.4 | |||
3,449,839 | + | -0.8 | |||
3,449,839 | + | -0.3 | |||
3,449,839 | + | -1.0 | |||
3,449,847 | - | -0.2 | |||
3,449,894 | + | -0.3 | |||
3,450,871 | - | -0.0 | |||
3,451,321 | - | DvMF_2727 | 0.28 | -0.8 | |
3,451,396 | - | DvMF_2727 | 0.32 | -0.2 | |
3,451,396 | - | DvMF_2727 | 0.32 | -0.7 | |
3,451,586 | + | DvMF_2727 | 0.43 | -2.6 | |
3,451,685 | + | DvMF_2727 | 0.48 | +0.3 | |
3,451,806 | + | DvMF_2727 | 0.55 | -0.9 | |
3,451,813 | + | DvMF_2727 | 0.56 | -0.8 | |
3,452,003 | + | DvMF_2727 | 0.66 | -0.5 | |
3,452,003 | + | DvMF_2727 | 0.66 | -3.4 | |
3,452,003 | + | DvMF_2727 | 0.66 | -0.6 | |
3,452,011 | - | DvMF_2727 | 0.67 | -0.2 | |
3,452,328 | + | DvMF_2727 | 0.85 | +0.9 | |
3,452,455 | + | -0.9 | |||
3,452,469 | - | -1.0 | |||
3,452,497 | - | -0.1 | |||
3,452,518 | - | +1.4 | |||
3,452,534 | - | -0.5 | |||
3,452,600 | + | -0.6 | |||
3,452,814 | + | DvMF_2728 | 0.17 | +0.6 | |
3,452,814 | + | DvMF_2728 | 0.17 | +2.0 | |
3,453,289 | - | DvMF_2728 | 0.66 | -0.0 | |
3,453,388 | - | DvMF_2728 | 0.76 | -0.9 | |
3,453,558 | - | -0.4 | |||
3,453,588 | - | -0.0 |
Or see this region's nucleotide sequence