Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2452

Experiment: MoYLS4 with methylglyoxal 0.0156 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2451 and DvMF_R0069 are separated by 198 nucleotidesDvMF_R0069 and DvMF_2452 are separated by 398 nucleotidesDvMF_2452 and DvMF_2453 are separated by 156 nucleotides DvMF_2451: DvMF_2451 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase (RefSeq), at 3,088,361 to 3,089,614 _2451 DvMF_R0069: DvMF_R0069 - tRNA-His (RefSeq), at 3,089,813 to 3,089,888 _R0069 DvMF_2452: DvMF_2452 - multi-sensor hybrid histidine kinase (RefSeq), at 3,090,287 to 3,093,820 _2452 DvMF_2453: DvMF_2453 - integral membrane protein MviN (RefSeq), at 3,093,977 to 3,095,767 _2453 Position (kb) 3090 3091 3092 3093 3094Strain fitness (log2 ratio) -1 0 1 2at 3089.679 kb on - strandat 3090.234 kb on - strandat 3090.274 kb on - strandat 3090.562 kb on + strandat 3090.965 kb on + strand, within DvMF_2452at 3090.973 kb on - strand, within DvMF_2452at 3090.995 kb on - strand, within DvMF_2452at 3091.254 kb on - strand, within DvMF_2452at 3091.521 kb on - strand, within DvMF_2452at 3091.795 kb on + strand, within DvMF_2452at 3092.095 kb on + strand, within DvMF_2452at 3092.206 kb on - strand, within DvMF_2452at 3092.224 kb on + strand, within DvMF_2452at 3092.344 kb on - strand, within DvMF_2452at 3092.353 kb on + strand, within DvMF_2452at 3092.353 kb on + strand, within DvMF_2452at 3092.361 kb on - strand, within DvMF_2452at 3092.444 kb on + strand, within DvMF_2452at 3092.507 kb on - strand, within DvMF_2452at 3092.682 kb on + strand, within DvMF_2452at 3092.807 kb on - strand, within DvMF_2452at 3092.908 kb on + strand, within DvMF_2452at 3092.991 kb on - strand, within DvMF_2452at 3092.991 kb on - strand, within DvMF_2452at 3093.283 kb on + strand, within DvMF_2452at 3093.291 kb on - strand, within DvMF_2452at 3093.433 kb on - strand, within DvMF_2452at 3093.510 kb on + strandat 3093.518 kb on - strandat 3093.673 kb on + strandat 3093.744 kb on + strandat 3094.056 kb on - strandat 3094.079 kb on + strandat 3094.129 kb on - strandat 3094.178 kb on + strand, within DvMF_2453at 3094.341 kb on - strand, within DvMF_2453at 3094.612 kb on - strand, within DvMF_2453at 3094.669 kb on + strand, within DvMF_2453at 3094.723 kb on + strand, within DvMF_2453at 3094.731 kb on - strand, within DvMF_2453at 3094.781 kb on + strand, within DvMF_2453

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with methylglyoxal 0.0156 %
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3,089,679 - -1.0
3,090,234 - -0.4
3,090,274 - -1.1
3,090,562 + +0.4
3,090,965 + DvMF_2452 0.19 -0.9
3,090,973 - DvMF_2452 0.19 -0.1
3,090,995 - DvMF_2452 0.20 -0.5
3,091,254 - DvMF_2452 0.27 +0.2
3,091,521 - DvMF_2452 0.35 -0.5
3,091,795 + DvMF_2452 0.43 -1.6
3,092,095 + DvMF_2452 0.51 -1.2
3,092,206 - DvMF_2452 0.54 +0.5
3,092,224 + DvMF_2452 0.55 -1.6
3,092,344 - DvMF_2452 0.58 -0.3
3,092,353 + DvMF_2452 0.58 +0.2
3,092,353 + DvMF_2452 0.58 -0.3
3,092,361 - DvMF_2452 0.59 -0.6
3,092,444 + DvMF_2452 0.61 +0.8
3,092,507 - DvMF_2452 0.63 +2.2
3,092,682 + DvMF_2452 0.68 -1.0
3,092,807 - DvMF_2452 0.71 -0.2
3,092,908 + DvMF_2452 0.74 -1.1
3,092,991 - DvMF_2452 0.77 -0.3
3,092,991 - DvMF_2452 0.77 +1.1
3,093,283 + DvMF_2452 0.85 -0.4
3,093,291 - DvMF_2452 0.85 -0.2
3,093,433 - DvMF_2452 0.89 +0.3
3,093,510 + -0.1
3,093,518 - -1.5
3,093,673 + -0.7
3,093,744 + +0.8
3,094,056 - -0.1
3,094,079 + -1.5
3,094,129 - -1.4
3,094,178 + DvMF_2453 0.11 -1.2
3,094,341 - DvMF_2453 0.20 -0.1
3,094,612 - DvMF_2453 0.35 -1.7
3,094,669 + DvMF_2453 0.39 -1.6
3,094,723 + DvMF_2453 0.42 +0.5
3,094,731 - DvMF_2453 0.42 -1.3
3,094,781 + DvMF_2453 0.45 -0.5

Or see this region's nucleotide sequence